PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G34960.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 67aa    MW: 7635.6 Da    PI: 9.1381
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G34960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-19352255
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                  +ykGVr+++ +g+Wv+eIr+p        +r++lg++ tae+Aa+a+++a++ + g
  OB04G34960.1  3 RYKGVRQRH-WGSWVSEIRHP-----LlyTRIWLGTYETAEDAARAYDEAARLMGG 52
                  6*******9.**********8.....446**********************97765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.48E-27260No hitNo description
SMARTSM003801.5E-34366IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-21361IPR016177DNA-binding domain
PfamPF008471.6E-12351IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-33361IPR001471AP2/ERF domain
PROSITE profilePS5103220.89360IPR001471AP2/ERF domain
PRINTSPR003676.0E-11415IPR001471AP2/ERF domain
PRINTSPR003676.0E-112642IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    Send to blast
MARYKGVRQR HWGSWVSEIR HPLLYTRIWL GTYETAEDAA RAYDEAARLM GGPAARTNFP  60
LTHDGGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-17466669ATERF1
3gcc_A4e-17466669ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G34960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1083552e-46AK108355.1 Oryza sativa Japonica Group cDNA clone:002-142-C04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692166.12e-43PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW54e-33ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLJ3M2711e-42J3M271_ORYBR; Uncharacterized protein
STRINGOB04G34960.12e-43(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.16e-21ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]