PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G34990.1
Common NameLOC102716589
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 421aa    MW: 45484.1 Da    PI: 7.818
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G34990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.62.4e-40184262178
                   --SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
           SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                   +Cq+egC+adls+ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++
  OB04G34990.1 184 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 262
                   6******************************98725689*************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-33179247IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.291182260IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.93E-37183263IPR004333Transcription factor, SBP-box
PfamPF031108.8E-31185259IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MMNVPSAAAS SCDEFGYAAA PHHHPHHHSA TPPPPPALLP IMDQDSGGGG GGGIQREQQH  60
LGYNLEPSSL ALLPPSNAAA AAHHATIAHA SPHDILQFYP TSHYLAGAGG GNPYSHFTAA  120
AGSTFQSYYQ QPTQAAPEYY FPTLVSSAEE NMASFAATQL GLNLGYRTYF PPRGGYTYGH  180
HPPRCQAEGC KADLSSAKRY HRRHKVCEHH SKAPVVVTAG GLHQRFCQQC SRFHLLDEFD  240
DAKKSCRKRL ADHNRRRRKS KPSDGEHSAE KRRAQANKSA ATKDKAGTSS SKNAGIGDGF  300
EAQLLGSAHM SKDQDQAMDL GEVVKEAVDP KGKASMQQQQ QQAHHGLHQQ SHHGGQQHGF  360
PFPSSSSGSC LFPQSQGAVS STDNTSNIAQ VQEPSLAFHQ HHQHSNILQL GQAMFDLDFD  420
H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-271852591184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254272RRRRKSKPSDGEHSAEKRR
2255260RRRKSK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G34990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7769920.0AB776992.1 Oryza rufipogon LG1 mRNA for squamosa promoter-binding-like protein 8, complete cds, strain: W630.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652941.10.0PREDICTED: squamosa promoter-binding-like protein 8
SwissprotQ01KM70.0SPL8_ORYSI; Squamosa promoter-binding-like protein 8
TrEMBLJ3M2740.0J3M274_ORYBR; Uncharacterized protein
STRINGOB04G34990.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.18e-43squamosa promoter binding protein-like 8