PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB04G35540.1

Common Name

LOC102720794

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WOX

Protein Properties

Length: 287aa MW: 30201.4 Da PI: 8.2036

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB04G35540.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.2	1.4e-18	41	101	3	57
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+t+t+eq+++L el+++ r p+ e+++++A l +++ ++V++WFqN++a+e++ OB04G35540.1 41 TRWTPTTEQIKILRELYYScgIRSPNSEQIQRIAGMLrqygRIEGKNVFYWFQNHKARERQ 101 7***************7668***********************************97 PP
2	Wus_type_Homeobox	112.9	1.6e-36	40	103	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRWtPt+eQikiL+ely+ +G+r+Pn+e+iqri+ +L++yG+ie+kNVfyWFQN+kaRerqk+ OB04G35540.1 40 GTRWTPTTEQIKILRELYYsCGIRSPNSEQIQRIAGMLRQYGRIEGKNVFYWFQNHKARERQKK 103 69*************9978***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.42E-12	35	105	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.203	36	102	IPR001356	Homeobox domain
SMART	SM00389	3.5E-5	38	106	IPR001356	Homeobox domain
Pfam	PF00046	3.7E-16	41	101	IPR001356	Homeobox domain
CDD	cd00086	2.45E-6	41	103	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.5E-7	42	101	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010492	Biological Process	maintenance of shoot apical meristem identity
GO:0080166	Biological Process	stomium development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MDRVQPQQQQ QQRQVGGGEE VAGRSGGGGG GGVSVCRPSG TRWTPTTEQI KILRELYYSC 60 GIRSPNSEQI QRIAGMLRQY GRIEGKNVFY WFQNHKARER QKKRLTTLDV NTAAADASQL 120 AFLSLSPTGA TAMAPSFPGP YVGNGGAVSA AQTDQATVSW DCTAMATERT FLQDFMGVSS 180 AGAAAAPTPW AITTREPETL PLFPVGGGGG GQECVGHGNL QRWGSAAAAA ATTTATAQQH 240 QLLQQHNFYS SSSSSNQLPS QDGSAAGTSL ELTLSSYCTP YPAGSSM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor required for the formation and development of tiller buds and panicles (PubMed:25697101). Required for tiller formation and female sterility (PubMed:27194802). Required for the early developmental stages of axillary meristem formation (PubMed:25841039). Plays a role in maintaining the axillary premeristem zone and in promoting the formation of the axillary meristem by promoting OSH1 expression (PubMed:25841039). Does not seem to be involved in maintenance of the shoot apical meristem (SAM) (PubMed:25841039). {ECO:0000269\|PubMed:25697101, ECO:0000269\|PubMed:25841039, ECO:0000269\|PubMed:27194802}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00265	DAP	Transfer from AT2G17950	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB04G35540.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by the cytokinin 6-benzylaminopurine. {ECO:0000269\|PubMed:17351053}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB218894	1e-150	AB218894.1 Oryza sativa Japonica Group mRNA for OsWUS protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006653851.1	0.0	PREDICTED: WUSCHEL-related homeobox 1B-like
Swissprot	Q7XM13	1e-117	WOX1_ORYSJ; WUSCHEL-related homeobox 1
TrEMBL	J3M2C9	0.0	J3M2C9_ORYBR; Uncharacterized protein
STRING	OB04G35540.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12465	31	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	5e-35	WOX family protein

Link Out ? help Back to Top
Entrez Gene	102720794

Publications ? help Back to Top
Lu Z, et al. MONOCULM 3, an ortholog of WUSCHEL in rice, is required for tiller bud formation. J Genet Genomics, 2015. 42(2): p. 71-8 [PMID:25697101] Tanaka W, et al. Axillary Meristem Formation in Rice Requires the WUSCHEL Ortholog TILLERS ABSENT1. Plant Cell, 2015. 27(4): p. 1173-84 [PMID:25841039] Mjomba FM, et al. Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice. G3 (Bethesda), 2016. 6(7): p. 2013-21 [PMID:27194802]