PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G35670.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 445aa    MW: 48019.6 Da    PI: 6.8755
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G35670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.81.1e-32263317155
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   k+r+rWt++LHerFv++v+qLGG++kAtPk il+lm+ +gLt++h+kSHLQkYR+
  OB04G35670.1 263 KTRIRWTQDLHERFVDCVNQLGGADKATPKGILKLMNSDGLTIYHIKSHLQKYRI 317
                   68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.662260320IPR017930Myb domain
SuperFamilySSF466898.96E-18261317IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-30262318IPR009057Homeodomain-like
TIGRFAMsTIGR015575.0E-24263318IPR006447Myb domain, plants
PfamPF002498.3E-9267316IPR001005SANT/Myb domain
PfamPF143797.1E-22348393IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MAGVGVVVVG CLCMLQDIMN AKKIKLRDCH YGVPLCDPSP PAQLLSAAAG MSFHPGLVST  60
AAHHHQQHGA GGWLSEEYAP KSSSSSSLLA QTCVGSNVAA FYAAEELLGM AQFDCAGLGT  120
TTTLAAMPTA IKAPFRSSES ELLPVDPLLL RGDHQSVSTY YVRPQKRGAG ERAPLPPPPP  180
SQQQQDRLHG LFAGAPTTRL LSGEPKIHSF SPQVAAKPIL PVMDAPISLQ SQMENQLSRS  240
CIGATPPVTP TGNLAGSAAA PSKTRIRWTQ DLHERFVDCV NQLGGADKAT PKGILKLMNS  300
DGLTIYHIKS HLQKYRIAKY MPATSEGKQQ EKRATGNDMQ NLDPKTGMQI TEALRVQLDV  360
QRRLHEQLEI QRSLQLRIEE QGKRLQKMFE DQLRASRGVM EPQELDVVAF ADGDGHDDAF  420
DDDVQLLAVA AGSDYDDAGF SSKIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-23263320158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-23263320158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-23263320158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-23263320158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G35670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1019510.0AK101951.1 Oryza sativa Japonica Group cDNA clone:J033075I07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652976.10.0PREDICTED: uncharacterized protein LOC102702933
RefseqXP_015691783.10.0PREDICTED: uncharacterized protein LOC102702933
TrEMBLJ3M2E20.0J3M2E2_ORYBR; Uncharacterized protein
STRINGOB04G35670.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69333751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.17e-65G2-like family protein