PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G35690.1
Common NameLOC102722212
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 304aa    MW: 31543.7 Da    PI: 10.0248
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G35690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.88e-08104129227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                   kt+ C  +     Ck+Gd+C+FaHg+
  OB04G35690.1 104 KTRMCTKYNTPEGCKFGDKCHFAHGE 129
                   99**********************96 PP
2zf-CCCH36.96.3e-12271296127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                   ykt+lC +f + GtC +G+rC+FaHg+
  OB04G35690.1 271 YKTKLCENFVK-GTCTFGERCHFAHGE 296
                   9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.5963765IPR000571Zinc finger, CCCH-type
SMARTSM003563.63764IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-53862IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-63962IPR000571Zinc finger, CCCH-type
PfamPF146080.374562No hitNo description
PROSITE profilePS5010313.892102130IPR000571Zinc finger, CCCH-type
SMARTSM003560.33102129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-8103133IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4104129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-13104134IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.89E-14168243IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.0E-15172242IPR004088K Homology domain, type 1
SMARTSM003225.5E-11172242IPR004087K Homology domain
PROSITE profilePS5008414.32173237IPR004088K Homology domain, type 1
CDDcd001053.97E-14175237No hitNo description
PfamPF000131.2E-10175237IPR004088K Homology domain, type 1
SuperFamilySSF902293.14E-9269300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-14269300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.244270297IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-8270296IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9271296IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEGAGATRKR SRPDMANGAA AGGKRSRETE SFQTGLSSKS KPCTKFFSTV GCPFGEGCHF  60
SHFVPGGYQA VAKTLNLGPA VPALARAPMD HVAAGNSHSA SSGKTRMCTK YNTPEGCKFG  120
DKCHFAHGER ELGKPAYMSH ESAMAPMGGR FGGRPEPPAP AAMGPPAGNF GASATAKISV  180
DASLAGGIIG KGGVNTKQIC RVTGVKLSIR DHESDPNLKN IELEGNFDQI KQASKMVGEL  240
IATISASTPT KKPSSAVAPA GRGGPGGRSN YKTKLCENFV KGTCTFGERC HFAHGENEQR  300
KGAA
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G35690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1219510.0AK121951.1 Oryza sativa Japonica Group cDNA clone:J033107K04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692062.10.0PREDICTED: zinc finger CCCH domain-containing protein 31
SwissprotQ7XPK11e-169C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLJ3M2E40.0J3M2E4_ORYBR; Uncharacterized protein
STRINGOB04G35690.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.19e-49C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]