PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G36130.1
Common NameLOC102712075
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 717aa    MW: 81228.2 Da    PI: 5.0049
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G36130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.68e-07115138327
                   S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   +++C +f++ G C  GdrC F Hgp
  OB04G36130.1 115 MVPCYYFQK-GNCLKGDRCAFYHGP 138
                   789******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.693160IPR000571Zinc finger, CCCH-type
SMARTSM003560.00513259IPR000571Zinc finger, CCCH-type
PfamPF156631.1E-113388No hitNo description
PROSITE profilePS5010310.9916288IPR000571Zinc finger, CCCH-type
SMARTSM003560.456487IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.197112139IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5112138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.04E-5113137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-5116139IPR000571Zinc finger, CCCH-type
PfamPF146080.85117137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MEADGAAAAE ASTEAGASAS ARPLAPEEEA LRRNTDCVYF LASPLTCKKG NECDFRHSEG  60
ARMNPRDCWY WLNSNCLNPK CPFRHPPIDG MFGAPTPGIP AVPSHYAPYN SGKQMVPCYY  120
FQKGNCLKGD RCAFYHGPQS IGNNPPEPVA KVTSLPLEQP QTQKNDLLFI KDSVQPNNSI  180
QQGAPIVDDR GKMAVDRSKV NSARTATVAV HTASNAVSWP KSEMIKNTMP AFKESFAATS  240
VDDHPESYQN HLPMESDPER DWNQSYEMPS ADDLPQNSRE ADELLGESSP GFDVLVDNNA  300
DGAAYLHDED FGGDMYPVED YEYAPADFDV HAHHERDRFN GSNEQDQVGH MYDGYERKRR  360
RSSSERSMER PFHSERRFLQ GNRNPVEMDG SDLRHRLRRR RINESSLAIS PERNGEHRRR  420
DERYRDRDER HRERAHSNST HRDRHQGSRG STLSSRLQGR IKLPGRSPDR VDTHSEKERD  480
RRRLCDRLSP VRRMEYQGDR HMDAGQCEER TRRRSSELAL GARNADGQHS TREVVDSRTF  540
SNRKTLRDSS KEKSVEPEAS LDFEGPKPLS VILQRKREAA WGNGSSASPK EDKSAEVSRG  600
QPTSLPEVEK EGENIISSEE YKSGSGDEEF RDEGHIPFEG HGQSSSHGDR LEGEDIIEVD  660
PVENQDAEKY DQREGESYYE AIEGQDYKSE DENAYEDDEE FDDDDDDFAR KVGVVFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1356360RKRRR
2356361RKRRRS
3480487RRRLCDRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G36130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708570.0AK070857.1 Oryza sativa Japonica Group cDNA clone:J023066C11, full insert sequence.
GenBankHQ8588410.0HQ858841.1 Oryza sativa Japonica Group isolate UT1510 C3H-related transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653006.10.0PREDICTED: zinc finger CCCH domain-containing protein 32
SwissprotQ0J9520.0C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32
TrEMBLJ3M2I80.0J3M2I8_ORYBR; Uncharacterized protein
STRINGOB04G36130.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]