PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G37720.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 131aa    MW: 14347.4 Da    PI: 6.5041
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G37720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.37e-11127102128
           NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
                   ++ktLvfy grap+g+ktdW++heyrl
  OB04G37720.1   1 MRKTLVFYLGRAPNGTKTDWIIHEYRL 27 
                   89***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.353145IPR003441NAC domain
SuperFamilySSF1019417.85E-14145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MRKTLVFYLG RAPNGTKTDW IIHEYRLVSV ADHQEGWVVC RAFQKPTTFT LQSPPLLHLQ  60
QHMHGDSGLV LASPPAPAPA DGDKESNMLL TPGAAGDPVA DHHSQLLAMM KQQAGAIDWS  120
FLDALLLHDS T
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G37720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066564e-31AL606656.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020J19, complete sequence.
GenBankAP0149604e-31AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691628.19e-92PREDICTED: NAC domain-containing protein 30-like
TrEMBLJ3M2Z78e-92J3M2Z7_ORYBR; Uncharacterized protein
STRINGOB04G37720.11e-92(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.12e-19NAC-domain protein 101