PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G11440.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WOX
Protein Properties Length: 86aa    MW: 9891.18 Da    PI: 10.9343
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G11440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.37.4e-202382357
                  --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
      Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                  +R+++t+eql +Lee+++   r+p+a+++++++++l    +++ ++V++WFq ++a+e++
  OB05G11440.1 23 TRWCPTPEQLMILEEMYRGgLRTPNAAQIQQITAHLstygRIEGKNVFYWFQTHKARERQ 82
                  8*****************99**************************************97 PP
2Wus_type_Homeobox119.81.2e-382183264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       ++tRW+PtpeQ++iLee+y+ GlrtPn+++iq+ita+L++yG+ie+kNVfyWFQ +kaRerq+
       OB05G11440.1 21 TTTRWCPTPEQLMILEEMYRGGLRTPNAAQIQQITAHLSTYGRIEGKNVFYWFQTHKARERQR 83
                       579***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.1021883IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-62382IPR009057Homeodomain-like
PfamPF000461.6E-172382IPR001356Homeobox domain
SuperFamilySSF466894.23E-112383IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MAPAVQQQQQ QQSGGGSSVG TTTRWCPTPE QLMILEEMYR GGLRTPNAAQ IQQITAHLST  60
YGRIEGKNVF YWFQTHKARE RQRLRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G11440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0789775e-85AC078977.6 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0496H07, complete sequence.
GenBankAM4902445e-85AM490244.1 Oryza sativa mRNA for putative wuschel homeobox protein (wox3 gene).
GenBankAP0011115e-85AP001111.1 Oryza sativa genomic DNA, chromosome 5, clone:P0699E04.
GenBankAP0149615e-85AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126135e-85CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692457.18e-58PREDICTED: putative WUSCHEL-related homeobox 2
SwissprotA2XZR32e-40WOX2_ORYSI; Putative WUSCHEL-related homeobox 2
SwissprotQ5W7C32e-40WOX2_ORYSJ; Putative WUSCHEL-related homeobox 2
TrEMBLJ3M3H02e-56J3M3H0_ORYBR; Uncharacterized protein
STRINGOB05G11440.13e-57(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.18e-40WOX family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]