PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G12110.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 234aa    MW: 26076.6 Da    PI: 7.7904
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G12110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.51.7e-103959222
                  --SS-EEEEEEE--TT-SS-E CS
          WRKY  2 dDgynWrKYGqKevkgsefpr 22
                   D ++WrKYGqK++kgs++pr
  OB05G12110.1 39 ADSWSWRKYGQKPIKGSPHPR 59
                  69******************9 PP
2WRKY45.51.5e-141111512059
                   S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY  20 fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    +r+YY+C+s  gCp++k+v+++++d ++++itY+++Hnh+
  OB05G12110.1 111 ASRGYYKCSSYrGCPARKQVDKCRNDASLLIITYTSDHNHD 151
                   68******9877****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.7E-303158IPR003657WRKY domain
SuperFamilySSF1182905.89E-83660IPR003657WRKY domain
SMARTSM007742.1E-2538152IPR003657WRKY domain
PfamPF031062.3E-64060IPR003657WRKY domain
PROSITE profilePS5081119.86440153IPR003657WRKY domain
SuperFamilySSF1182901.44E-11110152IPR003657WRKY domain
PfamPF031062.4E-11111151IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.7E-30113152IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MTKMSSMRAD GSVPKRRRQD VQKVVVSLKD HKVVQGPPAD SWSWRKYGQK PIKGSPHPRY  60
HQLALVPHTD TAMDVLVILQ SFAFALVLAC VMYITDNFYL LTYSLCGSYS ASRGYYKCSS  120
YRGCPARKQV DKCRNDASLL IITYTSDHNH DKYTATSSVQ EQKHNPDSTD AGAVLSNGMA  180
LAEVTVASSK LNNEEESCDF FDELEELPVS ASPLPSLSFM VQDSCFSDAR TRLL
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G12110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1305981e-105AC130598.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0056I11, complete sequence.
GenBankAK2417991e-105AK241799.1 Oryza sativa Japonica Group cDNA, clone: J065208G18, full insert sequence.
GenBankAK2880621e-105AK288062.1 Oryza sativa Japonica Group cDNA, clone: J075154N16, full insert sequence.
GenBankAP0149611e-105AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639937.14e-99probable WRKY transcription factor 69
TrEMBLJ3M3N71e-175J3M3N7_ORYBR; Uncharacterized protein
STRINGOB05G12110.11e-176(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149121821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-18WRKY DNA-binding protein 65