PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G13810.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 118aa    MW: 12690.8 Da    PI: 9.9824
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G13810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.12.8e-0742100555
                   HHHHHHHHHHH...HHHHHHHHHCTSCCC........TTS-STCHHHHHHHHHHHHHHH CS
           HLH   5 hnerErrRRdr...iNsafeeLrellPkas.....kapskKlsKaeiLekAveYIksLq 55 
                   +n  ErrR +r   ++ ++e Lr+l+P a        ++++l+  e L +A +YI  Lq
  OB05G13810.1  42 NNSKERRRIRRcveVRRKMEALRSLVPGAGgevaaEDGGGRLDAGELLFRAADYIARLQ 100
                   466667666654449*************999***99999******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.9884099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.16E-641104No hitNo description
SuperFamilySSF474592.09E-841114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-442100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-643114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MVARTTGCCD ETVAMTMMAK ATAPALAVAP RTTAAPAPPG RNNSKERRRI RRCVEVRRKM  60
EALRSLVPGA GGEVAAEDGG GRLDAGELLF RAADYIARLQ VQVKVMQLMV DVLEHAKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G13810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0874254e-37AC087425.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0676G05, complete sequence.
GenBankAP0149614e-37AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126134e-37CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637969.18e-25transcription factor IBH1
TrEMBLJ3M4572e-78J3M457_ORYBR; Uncharacterized protein
STRINGOB05G13810.14e-79(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91112126