PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G14140.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 812aa    MW: 89162.1 Da    PI: 9.7479
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G14140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.7e-1172116554
                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   h+e+ErrRR+riN  +++Lr++lP a     k ++Ka+ L  Av+ +++L
  OB05G14140.1  72 HSEAERRRRERINAHLATLRRILPDA-----KQMDKASLLASAVNQVREL 116
                   9*************************.....67***********988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.97767116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-1271122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-1172118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-872116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-1173122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2605.2E-5153200No hitNo description
SuperFamilySSF504941.35E-11498673IPR009003Peptidase S1, PA clan
Gene3DG3DSA:2.30.42.106.7E-9686760IPR001478PDZ domain
SuperFamilySSF501561.62E-8686757IPR001478PDZ domain
CDDcd009875.17E-7687796No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MATCQQQPWQ EGNQQQQQLL HHGGYGHGLP SVYRGTVVLP RRPGSLALPP PPPPPSSSGR  60
SATDQATALR IHSEAERRRR ERINAHLATL RRILPDAKQM DKASLLASAV NQVRELKKSA  120
TEVAAPVPPE ANEVTVQCYA GGGEHACTSV HATVSCDDRP GLLADIAGAL RRLRLRPLRA  180
DMSCLGGRTQ HAFVLRSEEE GAAPAAGDVN AAGGAPSARS LKEGVRQALA MAAFPEMVYS  240
SSSRSKRQRR MLESREKKEE IKDGAFPFTR TPIGDRDPGR RNPPVMPTTR RRRRRRGTGS  300
GPASGRDSHG GGGGEGRQHA GATRTPDVPA PMPLPRQPHL SPGRPLQSPS IDSGGSSSES  360
DNRWSWQYGA DSGSSSDVDI KWKTMITMAT SSRSANPPRP PSASVPATKP VTSSVQERKR  420
RRRRDMASTS SRLSLPDQSS SKMPPPQLDA GKSTCLEQLP MFKQSVYHRN IIDWHDLRQK  480
NAALDVAESM LSLSSSSDGK AIDHCTGFII EHDKVHGSAV IVTSSQIICT KKSLDDWKDN  540
NVYSPDAKVI AHLWDGTSSE LQLLCFNRHY EIIFYSLNGG QLQKVAPLDP NFRFGTEACV  600
LARDKDLELI CRRTVIKALD PCEHQRNHYL FIDALKCEGC SGGALANFDG SILGMVLYAR  660
PNVAFLPSSI ILKCFKLWKR FRKLARPNLG VRLRTVGFLD ISHLDNLSRI YGVRSGLIVA  720
KVSVGSPAER NGIRVGDIIF QCQREFISTI TEFEDMLLDV CENQFEKGTN VNSKVDIELG  780
VYNVRKRARR NITLSVELSD GMEVIDEGLW DD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17580ERRRRE
2289295RRRRRRR
3417421RKRRR
4417423RKRRRRR
5417424RKRRRRRD
6418423KRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G14140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3M4900.0J3M490_ORYBR; Uncharacterized protein
STRINGOB05G14140.10.0(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.16e-09bHLH family protein