PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB05G14280.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 125aa MW: 13791.4 Da PI: 7.85

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB05G14280.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.7	4.1e-38	15	103	1	89
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+Ca++C+++pyf +p+kfa vhk+FGasnv+k+l +++e++r da++slvyeA+ r+rdPvyG++g il+lqqq+ OB05G14280.1 15 PCAACKLLRRRCAQECPFSPYFSPLEPHKFASVHKVFGASNVSKMLLEVQESQRGDAANSLVYEANLRLRDPVYGCMGAILTLQQQVXX 103 7*************************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.131	14	125	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-38	15	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
GAEELQPAGG XTITPCAACK LLRRRCAQEC PFSPYFSPLE PHKFASVHKV FGASNVSKML 60 LEVQESQRGD AANSLVYEAN LRLRDPVYGC MGAILTLQQQ VXXXXXXXXX XXXXXXXXXX 120 XXPPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-35	15	101	11	97	LOB family transfactor Ramosa2.1
5ly0_B	1e-35	15	101	11	97	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB05G14280.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP095831	1e-107	FP095831.1 Phyllostachys edulis cDNA clone: bphyst036h20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881485.1	2e-61	LOB domain-containing protein 15 isoform X1
Refseq	XP_025881486.1	2e-61	LOB domain-containing protein 15 isoform X2
Swissprot	Q9AT61	2e-54	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	J3M4A4	1e-66	J3M4A4_ORYBR; Uncharacterized protein
STRING	OB05G14280.1	2e-67	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	7e-57	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]