PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G15870.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 403aa    MW: 43531.7 Da    PI: 8.9194
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G15870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52.1e-12199243554
                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   h   Er+RR+++N++f  Lr++lP+a     +K +Ka+iL +A +Y++ L
  OB05G15870.1 199 HVLSERKRREKLNDSFKALRDVLPPA-----TKKDKASILMRAKDYVNVL 243
                   7789*********************9.....9**************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-17194264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.643194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-13197241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.34E-12199248No hitNo description
PfamPF000107.3E-10199243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-12200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.1705.2E-4242264No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MNSQAMQQQL SQIYMLMDME EHDCHQYASL APASAPSHSS SSFRSFSTGT SRDDNSTSLM  60
LAAADTSTNT AASCHHRHQQ PEVSSQIGAP PLSICHQETH PPQSRRSGGG HGAAAASAFR  120
SYSRYLGPRK TLRPGATTGG GQRAFKKAIS VLSKIHTVRL AQYYQIMEMA AAQARSPPVT  180
GSSGDSSNQQ QQQQLQLQHV LSERKRREKL NDSFKALRDV LPPATKKDKA SILMRAKDYV  240
NVLKARVAEL EEKNRMLAES QSQLHAGDGD GGGELQVDDK RDDDDDGGDR IEVDVGRSAA  300
EGTADKCQEL HLKIVLGSSS ACSAMDAVAG ILKGLNEKRD ARLLATGSSG RLPRAKSSQQ  360
PPSKATANVQ FIPQSSSSDE DIVKEAVIKV IKDVMQPEKV LRT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202207ERKRRE
2203208RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G15870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076752e-85AK107675.1 Oryza sativa Japonica Group cDNA clone:002-132-A01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692999.10.0PREDICTED: putative transcription factor bHLH041
TrEMBLJ3M4R30.0J3M4R3_ORYBR; Uncharacterized protein
STRINGOB05G15870.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.15e-15bHLH family protein