PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G20210.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 321aa    MW: 35893.1 Da    PI: 7.0047
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G20210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.27.8e-19124177353
                   -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEE CS
          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYe 53 
                   Dg  WrKYGqKe+++ ++p++Y+rCt++    C ++++v+r+++dp    +tY 
  OB05G20210.1 124 DGQPWRKYGQKEIQNCKHPKAYFRCTHKydqLCAAQRQVQRCDDDPASYRVTYI 177
                   9999***********************98878********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-19109177IPR003657WRKY domain
PROSITE profilePS5081116.673117176IPR003657WRKY domain
SuperFamilySSF1182903.14E-18120177IPR003657WRKY domain
SMARTSM007741.7E-23122181IPR003657WRKY domain
PfamPF031067.0E-17124177IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MTSSMAPAPL PPPPYAQVME DMEKGRELAA RLVALLHDSP EAGRIVDQIL HSFSRAMQAL  60
NKAVSAAAGE GSEVQSEVTC GASAGGKRKA AAAAGGAAPE RRASCRRRTQ QSSGETVVVK  120
NLGDGQPWRK YGQKEIQNCK HPKAYFRCTH KYDQLCAAQR QVQRCDDDPA SYRVTYIXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXLDG GAGGGAMQEL  300
FRDDDGVFDD LFGDLLLNYD H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-36115177163OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G20210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655196.11e-127PREDICTED: probable WRKY transcription factor 70, partial
TrEMBLJ3M5Z71e-100J3M5Z7_ORYBR; Uncharacterized protein
STRINGOB05G20210.11e-101(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76563549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.16e-22WRKY DNA-binding protein 70