PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G22290.1
Common NameLOC102719868
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 189aa    MW: 21032.6 Da    PI: 7.8468
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G22290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.11.3e-191960243
                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                   ie k +rqvtfskRr g++KKA+ELS L++a +av+++s+ 
  OB05G22290.1 19 HIETKGQRQVTFSKRRSGLFKKASELSMLTGASIAVVVMSEA 60
                  59999***********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554556.41E-241083IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-241069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.5911070IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-151232IPR002100Transcription factor, MADS-box
PfamPF003198.6E-202066IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-153247IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-154768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009960Biological Processendosperm development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MVRPHGGTSM GRQRIEIRHI ETKGQRQVTF SKRRSGLFKK ASELSMLTGA SIAVVVMSEA  60
RNAFCFGDPS VDAILRRYAP VPGEAAAAAS VGPSHVHGAA RDDDDDRDRH HHEELRKAVE  120
DARSQVAAEK SRLSEVAKKI EAAKADRQFW WEADVEALGE AELPEFTRAL EKLMANVRRH  180
ADDQPQQQQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G22290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655257.11e-136PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLJ3M6K51e-135J3M6K5_ORYBR; Uncharacterized protein
STRINGOB05G22290.11e-135(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-26AGAMOUS-like 62