PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G22780.1
Common NameLOC102700242
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SRS
Protein Properties Length: 234aa    MW: 24253.8 Da    PI: 8.5863
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G22780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702221.81.4e-68111733154
        DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasska.aasaaeaaskrkrelkskkqsalsstklssaeskk 98 
                   sg+a+C+dCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerqq + a+s ++ a  a++ ++k++r l s++++++s+t++s+a++++
  OB05G22780.1  11 SGAATCHDCGNQAKKDCIHHRCRTCCKSRGFDCSTHVKSTWVPAARRRERQQLAGASSPTTsAFPATTVSAKKPRLLGSQTTTTTSRTSTSNATTPR 107
                   6889**********************************************988776654440444588899999*9999****************** PP

        DUF702  99 eletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                   +++tss          lP++v+++avfrcvrv+svddg++e+aYq+av+i+Gh+f+G+LydqG+++
  OB05G22780.1 108 SFDTSSshqvasfkdaLPRHVRAPAVFRCVRVTSVDDGDDEFAYQAAVTINGHMFRGFLYDQGADD 173
                   ****999********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.6E-6113172IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.3E-271557IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016247.3E-26124170IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MLDYGGVSAA SGAATCHDCG NQAKKDCIHH RCRTCCKSRG FDCSTHVKST WVPAARRRER  60
QQLAGASSPT TSAFPATTVS AKKPRLLGSQ TTTTTSRTST SNATTPRSFD TSSSHQVASF  120
KDALPRHVRA PAVFRCVRVT SVDDGDDEFA YQAAVTINGH MFRGFLYDQG ADDGRGGTAS  180
ASNDDSSHAA AAGVPSISDL HLGSASAAVP PHLYSGGGGG PLILGGLGYG NTMN
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G22780.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1047101e-132AC104710.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1286_E05, complete sequence.
GenBankAC1362191e-132AC136219.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0073E05, complete sequence.
GenBankAP0149611e-132AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-132CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655270.21e-171PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
SwissprotQ94CK92e-64LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLJ3M6Q41e-170J3M6Q4_ORYBR; Uncharacterized protein
STRINGOB05G22780.11e-170(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35793679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.21e-57Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]