PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G23410.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 623aa    MW: 66165 Da    PI: 4.9401
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G23410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like231.7e-073293622354
       G2-like  23 GsekAtPktilelmkvkgL..tlehvkSHLQkYR 54 
                   G   A Pk+i elm+++g+  t ++v SHLQk++
  OB05G23410.1 329 GLPYAGPKRIQELMELEGIfvTKAQVSSHLQKFK 362
                   556799************65599*********96 PP
2Response_reg33.42.4e-1229124194
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH...ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd...pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                   vl+vdD  + +e l+  l  +gy  v+  +++ eal+ l+++    +D+i++D+ m g dG++ll    eee+ +  +   + g+ +++++ +   a
  OB05G23410.1  29 VLVVDDAAVHLEELKLTLLLSGY-AVTGKTTAGEALQELERNPedyFDIIMTDVHMHGTDGFDLLHVFSEEEEVVTMVRAVMDGAVDYMVKPMTSEA 124
                   89*********************.6665555555555554433356*******************98877775555555555555555555554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.27E-2026139IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.6E-1826145No hitNo description
SMARTSM004487.8E-1227129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011016.61528133IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.7E-929126IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.22E-1330133No hitNo description
Gene3DG3DSA:1.10.10.606.7E-12289363IPR009057Homeodomain-like
SuperFamilySSF466892.15E-5291366IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005622Cellular Componentintracellular
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MAAESVVVAA VVPPGCKLPA AGFLGRLHVL VVDDAAVHLE ELKLTLLLSG YAVTGKTTAG  60
EALQELERNP EDYFDIIMTD VHMHGTDGFD LLHVFSEEEE VVTMVRAVMD GAVDYMVKPM  120
TSEAIRSIWT HVLRRRLSSL APQASSLSSE RLAAAAAPLA GSRRGDSHQK EAMASPPPPA  180
ENGRRDVHEA VQAAFAPQPP VSAPDCDVQE AEQLVQSGVR DAALPQPLAP ASGEVQDASA  240
AAATTTTTAG SSRGADGQEE AAMAAATKRG APEVSDKGSN SLEQTAGKKA RVRFVWTTES  300
HSAFVRAFYQ LKEYEGIISL RFSASDIYGL PYAGPKRIQE LMELEGIFVT KAQVSSHLQK  360
FKGWLENKNN NLPEASRSMH SLLMSNYTGR QDRNISSWKR SSVTTEGPFA GMFYGLPVHP  420
MATSNSRLTT TQTNFVGVAP KEMDNFISQG IAIGYGSAVR QASLCSEANP AGQNVHANGS  480
SQGRGSALGN DISASYGVAV TNVDLLQVIT ASLPSTMRQP VQPSQSFSTI NGLAANLGVV  540
ISDQNPGTCS AANSSAINNQ SPATQEMSRP HTSELGHGSN VMLDWAELAG LDDQLDNDVL  600
MMNSLFDGEH LQQGVDTAMD GTQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G23410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692588.10.0PREDICTED: two-component response regulator ORR27-like
SwissprotQ75HW20.0ORR27_ORYSJ; Two-component response regulator ORR27
TrEMBLJ3M6W70.0J3M6W7_ORYBR; Uncharacterized protein
STRINGOB05G23410.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159621113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.18e-15response regulator 2
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]