PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G25260.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 134aa    MW: 15379.5 Da    PI: 9.0405
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G25260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+ +++ +G g+W++ ++  g+ R++k+c++rw +yl
     OB05G25260.1 14 KGAWTKEEDQRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 61
                     79******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-24564IPR009057Homeodomain-like
PROSITE profilePS5129423.411965IPR017930Myb domain
SMARTSM007176.7E-141363IPR001005SANT/Myb domain
PfamPF002493.4E-161461IPR001005SANT/Myb domain
SuperFamilySSF466891.46E-221589IPR009057Homeodomain-like
CDDcd001674.91E-111661No hitNo description
PROSITE profilePS500905.3962102IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.1E-96588IPR009057Homeodomain-like
SMARTSM007173266107IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLIAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWMNY  60
LRPDLKRGNF TDDEDELIIR LHGLLGNKAS NGMELGTGER WRNANMNFYL VNDQKQFFKA  120
EVMHGPLTID QSHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-17139826110MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G25260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1306001e-107AC130600.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0048I21, complete sequence.
GenBankAK0668341e-107AK066834.1 Oryza sativa Japonica Group cDNA clone:J013083O13, full insert sequence.
GenBankAK0991081e-107AK099108.1 Oryza sativa Japonica Group cDNA clone:J023030O22, full insert sequence.
GenBankAK1040531e-107AK104053.1 Oryza sativa Japonica Group cDNA clone:001-023-G03, full insert sequence.
GenBankAP0149611e-107AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-107CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankD886171e-107D88617.1 Oryza sativa mRNA for OSMYB1, complete cds.
GenBankEU8372461e-107EU837246.1 Oryza sativa Japonica Group clone KCS051A09 myb transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654438.14e-60PREDICTED: myb-related protein 308
SwissprotP813931e-56MYB08_ANTMA; Myb-related protein 308
TrEMBLJ3M7F22e-96J3M7F2_ORYBR; Uncharacterized protein
STRINGOB05G25260.13e-97(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-58myb domain protein 6
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]