PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G25990.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 146aa    MW: 16322.4 Da    PI: 10.3846
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G25990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-072368346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +W++ Ed+ +  a   ++ +   +W ++a++++ gR++ ++ +++q 
     OB05G25990.1 23 AWSKAEDKVFESALVAFPDHtpnRWVLVASRLP-GRSAQEVWEHYQA 68
                     7*****************9999***********.***********95 PP
2Myb_DNA-binding254.5e-08861221147
                      HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      l++++ +++G g+W+ I+r   k+Rt+ q+ s+ qk+
     OB05G25990.1  86 LFLEGLEKYGRGDWRNISRWSVKTRTPTQVASHAQKF 122
                      79*********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.5E-62072IPR001005SANT/Myb domain
SuperFamilySSF466892.32E-112276IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-62270IPR009057Homeodomain-like
CDDcd001673.91E-62370No hitNo description
PfamPF002493.3E-62368IPR001005SANT/Myb domain
PROSITE profilePS500906.8532470IPR017877Myb-like domain
PROSITE profilePS500904.22882123IPR017877Myb-like domain
SuperFamilySSF466895.01E-1185127IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-1086126IPR006447Myb domain, plants
CDDcd001677.40E-686123No hitNo description
SMARTSM007171386125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-587118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MAFYRGGSSS WAAAMMAAPS SRAWSKAEDK VFESALVAFP DHTPNRWVLV ASRLPGRSAQ  60
EVWEHYQALV SDVDLIERGM VESPGLFLEG LEKYGRGDWR NISRWSVKTR TPTQVASHAQ  120
KFFIRQANAG SRGDTKRKSI HDITAP
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G25990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9714055e-71EU971405.1 Zea mays clone 363908 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692615.13e-89PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H78e-35DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLJ3M7M51e-103J3M7M5_ORYBR; Uncharacterized protein
STRINGOB05G25990.11e-104(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.16e-34MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]