PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB05G26010.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 249aa MW: 27863 Da PI: 5.8055

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB05G26010.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	143	1.6e-44	4	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk........kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppG+rF Pt+eelv++yL++k++g++ ++e+vi+ +d+++++Pw+Lp + +++e+ w++F++r++++a+g r++r+t sgyWka g+ OB05G26010.1 4 LPPGYRFYPTEEELVCFYLRHKLDGRRcRDIERVIPVADVCSLDPWQLPGtprqvhqgAWTGDEEPWFYFCPRQEREARGGRPSRTTPSGYWKAAGT 100 79***********************5566778**********954776655444447789*************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s++++ +g+kkt+vfy+grap+g+kt+W m+eyr+ OB05G26010.1 101 PGVVYSADRRPIGMKKTMVFYRGRAPSGTKTEWKMNEYRA 140 ************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.89E-49	3	167	IPR003441	NAC domain
PROSITE profile	PS51005	47.666	4	168	IPR003441	NAC domain
Pfam	PF02365	1.7E-24	5	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MGELPPGYRF YPTEEELVCF YLRHKLDGRR CRDIERVIPV ADVCSLDPWQ LPGTPRQVHQ 60 GAWTGDEEPW FYFCPRQERE ARGGRPSRTT PSGYWKAAGT PGVVYSADRR PIGMKKTMVF 120 YRGRAPSGTK TEWKMNEYRA FHYPAAAAPP SLPPQLRSEF SLCRLYTRSG CLRQFDRRAP 180 ADENTGTTST AAAAASPEEN DGSGGSMQQQ QQQEQAELVI DQGGAAVDPD GWYDSDAATL 240 TALLYWPGD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-31	4	168	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-31	4	168	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-31	4	168	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-31	4	168	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-31	4	168	20	168	NAC domain-containing protein 19
3swm_B	2e-31	4	168	20	168	NAC domain-containing protein 19
3swm_C	2e-31	4	168	20	168	NAC domain-containing protein 19
3swm_D	2e-31	4	168	20	168	NAC domain-containing protein 19
3swp_A	2e-31	4	168	20	168	NAC domain-containing protein 19
3swp_B	2e-31	4	168	20	168	NAC domain-containing protein 19
3swp_C	2e-31	4	168	20	168	NAC domain-containing protein 19
3swp_D	2e-31	4	168	20	168	NAC domain-containing protein 19
4dul_A	2e-31	4	168	17	165	NAC domain-containing protein 19
4dul_B	2e-31	4	168	17	165	NAC domain-containing protein 19
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	22	31	RHKLDGRRCR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB05G26010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK063703	1e-135	AK063703.1 Oryza sativa Japonica Group cDNA clone:001-119-G11, full insert sequence.
GenBank	JN185442	1e-135	JN185442.1 Oryza sativa Japonica Group NAC transcription factor 12 (NAC12) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015692825.1	1e-155	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	9e-65	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	J3M7M7	0.0	J3M7M7_ORYBR; Uncharacterized protein
STRING	OB05G26010.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	3e-64	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]