PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G26090.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 363aa    MW: 39714.4 Da    PI: 6.8585
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G26090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.2e-06201220120
                   EEETTTTEEESSHHHHHHHH CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                   ++C+ C+k F+r  n++ H+
  OB05G26090.1 201 FVCHVCNKAFNRYNNMQMHM 220
                   89*****************9 PP
2zf-C2H213.60.00021288310123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   + C  Cgk+F  k + ++H +++
  OB05G26090.1 288 FACRRCGKPFAVKGDWRTHEKNC 310
                   78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.05E-5197224No hitNo description
PROSITE profilePS5015710.388201228IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-5201220IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280203223IPR007087Zinc finger, C2H2
SuperFamilySSF576677.9E-6272308No hitNo description
Gene3DG3DSA:3.30.160.606.5E-5275308IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MVLRACTMVE GSAGFGGGAV PFFEWLGPRR PPSSPSSSST STTSSSLTAA PSRGEEDARD  60
AGTMLCLPLL GRLGEEPVPD DHVGTMNNPV KEEVSNNTTD DAGVDLNIGL LASGGGCSSD  120
DTPMDEDDDD DEEETEDEEK AAGHEKWKVE EREEVHSEGS NYVVSMGVEE SSKAGDVDAG  180
GRTRRYWIPT PAQILIGPVQ FVCHVCNKAF NRYNNMQMHM WGHGREYRKG PESLKGTQAT  240
ATLAMLKLPC YCCAAGCRNS VVHPRARPLK DFRTLQTHYK RKHGAKPFAC RRCGKPFAVK  300
GDWRTHEKNC GKRWFCACGS DFKHKRSLND HVRSFGGGPL PAPPAAAPPK QQQRVIHFDD  360
HRA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G26090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1026580.0AK102658.1 Oryza sativa Japonica Group cDNA clone:J033101H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640742.11e-171protein TRANSPARENT TESTA 1 isoform X1
SwissprotQ8W0301e-96ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLJ3M7N50.0J3M7N5_ORYBR; Uncharacterized protein
STRINGOB05G26090.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.15e-94WIP domain protein 4
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]