PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G26540.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 576aa    MW: 61856 Da    PI: 7.9461
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G26540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.21.8e-103543911954
                   HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
      Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   Fe   ++yp+ ++++ LAk++gLt +qV++WF N R +
  OB05G26540.1 354 FEHflHPYPTDSDKQMLAKQTGLTRNQVSNWFINARVR 391
                   554459******************************88 PP
2BELL94.78.3e-31221290372
          BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                   +e q +k++L+sl+e V+krYkqy++qlq+vissFe+vagl +a+p++s+Al+++S+hF+ Lk +i +q+
  OB05G26540.1 221 AEQQWRKTRLISLMEDVCKRYKQYYQQLQAVISSFETVAGLSNAAPFASMALRTMSKHFKYLKGMILNQL 290
                   58899*************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.4E-37152288IPR006563POX domain
PfamPF075265.4E-36157286IPR006563POX domain
PROSITE profilePS5007112.455332395IPR001356Homeobox domain
CDDcd000862.75E-14335396No hitNo description
SMARTSM003891.4E-11335399IPR001356Homeobox domain
SuperFamilySSF466894.28E-17337402IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-29338399IPR009057Homeodomain-like
PfamPF059205.1E-19352391IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MSSAAGGGGG GGGYGGGEHQ HQLLPGHAAG QLYHVPQHSR REKLRFPPDH PPESSTPPGS  60
WPLPPAYYSY ASSSSSYSPH SPTSLAQAQA HAQAQLVAHG MPPGTASGGA QIPSQNFALS  120
LSSASSNPPP TPRRQFVGGS SGGAAGPYGP FTGYAAVLGR SRFLGPAQKL LEEICDVGGR  180
PAQIDRGSDE GLLDVDAMDA TGSVDHDMDG SDPEAVTVSG AEQQWRKTRL ISLMEDVCKR  240
YKQYYQQLQA VISSFETVAG LSNAAPFASM ALRTMSKHFK YLKGMILNQL RNTSKGATKD  300
GLSREDTANF GIMGGSVSLL RGNNVNSFSQ PHNIWRPQRG LPERAVSVLR AWLFEHFLHP  360
YPTDSDKQML AKQTGLTRNQ VSNWFINARV RLWKPMVEEI HNLEMRQLQK NPSLDKNQLS  420
MQHTQHSSDS SGKLCDPSNS LQGQSSSMTR NHSVSASRHI EDGLSQMPHD IAGQVSFAYN  480
GLAAHHSIAM SSHPQQPDLI GTVGAANAGG VSLTLGLHQN NRAYIAEPLP AALPLNLAHR  540
FGLEDVSDAY VMSSFGGQDR HFTKEIGGHL LHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-17341398158Homeobox protein Meis1
4xrs_B3e-17341398158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G26540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1009160.0AK100916.1 Oryza sativa Japonica Group cDNA clone:J023133E06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654500.10.0PREDICTED: BEL1-like homeodomain protein 9
TrEMBLJ3M7T00.0J3M7T0_ORYBR; Uncharacterized protein
STRINGOB05G26540.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.14e-73TALE family protein