PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G26550.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 237aa    MW: 26164.4 Da    PI: 8.4515
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G26550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.4e-1170117454
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   ++  rE++RRdr+N++f+eL  +l +    + +K +K++iL  A + + +L
  OB05G26550.1  70 TKACREKQRRDRLNERFNELSAILEPG---KPPKADKVAILSDAARLLGQL 117
                   5678**********************9...99************9988777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-1258132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.39266117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-870117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.47E-870122No hitNo description
SMARTSM003534.9E-972123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1273140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MSCGGAGQSG WLLEYGLEEI QSSDFIYMAG DPAVSSVLLG FDVPRKEDGG QDTSASKKRS  60
RPESSAPPGT KACREKQRRD RLNERFNELS AILEPGKPPK ADKVAILSDA ARLLGQLRAE  120
AQKLKSSNES LQDSIKSLKV SSSSTRARWL DSHSPEERRA DEFERVKCMQ AEKSELRDEK  180
TRLKAEREIH PAAAFAQAGG KYVPYATSYP PPAAFWQWIP PTSLDTSKDP VMWPPVA
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G26550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692905.11e-142PREDICTED: transcription factor ILR3-like
TrEMBLJ3M7T11e-172J3M7T1_ORYBR; Uncharacterized protein
STRINGOB05G26550.11e-173(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93863136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.17e-47bHLH family protein