PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G27530.1
Common NameLOC102719391
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 230aa    MW: 24736.8 Da    PI: 5.6909
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G27530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.3e-1765113355
           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+Wv+eIr+p   + r kr++lg+f++a +Aa a+++a+ ++ g
  OB05G27530.1  65 YRGVRQRR-WGKWVSEIREP---N-RgKRHWLGTFDSAADAAPAHDKAAAAILG 113
                   9****998.**********8...3.35**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.16764121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-2964122IPR001471AP2/ERF domain
SMARTSM003802.0E-3264127IPR001471AP2/ERF domain
PfamPF008471.0E-1064113IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2064123IPR016177DNA-binding domain
PRINTSPR003671.2E-86576IPR001471AP2/ERF domain
CDDcd000182.27E-1665123No hitNo description
PRINTSPR003671.2E-887103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAGGEREAAA VGMTSEGVEV EKEPATLLPS PSVPRKKQTH AKNSDTPDAG GARRAPRAKR  60
CPNSYRGVRQ RRWGKWVSEI REPNRGKRHW LGTFDSAADA APAHDKAAAA ILGNRAVLNF  120
PASSPLAAAV APEQREAPCC SSAAAVPAAV FEEEHAVKPA VLPLMQGGAG GTETKARHWE  180
WDAASWPAQG MFQCLDDIAM YLELDAVKTE DCQVEQLDDD VFDSPLWSLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1665121360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-1665121663ATERF1
3gcc_A4e-1665121663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G27530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126135e-75CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8342425e-75CT834242.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109B04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655403.11e-168PREDICTED: dehydration-responsive element-binding protein 2D-like
SwissprotQ65WX11e-58DRE2D_ORYSJ; Dehydration-responsive element-binding protein 2D
TrEMBLJ3M8291e-166J3M829_ORYBR; Uncharacterized protein
STRINGOB05G27530.11e-167(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141022226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.28e-14DRE-binding protein 2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]