PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G27840.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 269aa    MW: 29963 Da    PI: 6.9495
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G27840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY57.33.2e-18133194259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                   +Dgy+WrKYG K++ ++efp+ YYrC ++   +C++kk v++++ + p  +++t ++eH+++
  OB05G27840.1 133 NDGYHWRKYGEKTILNTEFPKLYYRCGYSderKCQAKKYVQQANrKHPPEFTVTLTNEHTCN 194
                   7**************************998899*******99762678899********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.5E-20126194IPR003657WRKY domain
SuperFamilySSF1182901.83E-19126194IPR003657WRKY domain
PROSITE profilePS5081115.021127196IPR003657WRKY domain
SMARTSM007741.3E-26132195IPR003657WRKY domain
PfamPF031062.4E-20133193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MATRMPNSER SPSPPSPLDQ RDAAIQELQK GSDLVKLLGE QLGRLPVQLG CRDDALTSVR  60
DISMSLDSSL YALQSERDQH RGSSSGAGGP GAVTSDGGGG RSSTRARRTT HRRGKHGEEH  120
PRRRIFTTTT PENDGYHWRK YGEKTILNTE FPKLYYRCGY SDERKCQAKK YVQQANRKHP  180
PEFTVTLTNE HTCNTLLPDQ PSSSSTSQVL DFTKASMSSP MDPHADTAML KEEEEEEAPS  240
IDESTRIMST SVSSYGAYDY NELSPQSWK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G27840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693093.11e-169PREDICTED: WRKY transcription factor 55-like
TrEMBLJ3M8600.0J3M860_ORYBR; Uncharacterized protein
STRINGOB05G27840.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99932944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-14WRKY DNA-binding protein 70