PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G28200.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 334aa    MW: 35926.1 Da    PI: 6.4302
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G28200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS164.58.8e-511113162214
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                   ++lL+ecA a+s g+l+ a+ +L +ls++asp++ +  +Rl+ayf++A+ arl++s+ ++++ l+  +      +   aa++++++v P+ ++++l+
  OB05G28200.1 111 ISLLMECAAAMSVGNLADANGTLLELSQMASPYAaSCGERLVAYFVRAMTARLVGSWVGVAAPLAQPPC-----AAINAAFRALYNVAPFARLAYLA 202
                   789******************************96778*******************999976655555.....46778999*************** PP

          GRAS  98 aNqaIleavegeervHiiDfdisqG..lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                   +Nq+Ilea++g++ vHi+D+d+  G  lQW++Ll aLa+Rp+gpp +R+Tg+g     s+  l+ tg++La +A++l ++fef +++ +  ++  + 
  OB05G28200.1 203 CNQTILEAFHGKRLVHIVDLDVVPGgaLQWLSLLPALAARPGGPPVIRVTGFGM----SASVLHDTGNQLAGLARKLCMSFEFYAVAKRPGDADAVA 295
                   **********************988447**************************....9**************************877788888899 PP

          GRAS 193 eLrvkp.gEalaVnlvlqlhrll 214
                   +   ++ gE++aV++  +  ++ 
  OB05G28200.1 296 DVPGRRpGEVVAVHWLRH--SMC 316
                   9966656*******9863..333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.41384334IPR005202Transcription factor GRAS
PfamPF035143.1E-48111316IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MTGRGSNMQD SLGLMQFHDH QYLYSSSSSN LPLQQPLLYH HHQFVEAREG CTGEDDAPEF  60
VEPAAAAARA MELRACKEVY SEGGGAVEER TAMAGAEQVV EEEEAHGVRM ISLLMECAAA  120
MSVGNLADAN GTLLELSQMA SPYAASCGER LVAYFVRAMT ARLVGSWVGV AAPLAQPPCA  180
AINAAFRALY NVAPFARLAY LACNQTILEA FHGKRLVHIV DLDVVPGGAL QWLSLLPALA  240
ARPGGPPVIR VTGFGMSASV LHDTGNQLAG LARKLCMSFE FYAVAKRPGD ADAVADVPGR  300
RPGEVVAVHW LRHSMCNQYQ RRQQIESMVS TKRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-4510131710226Protein SCARECROW
5b3h_A3e-451013179225Protein SCARECROW
5b3h_D3e-451013179225Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G28200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0939520.0AC093952.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1004_E02, complete sequence.
GenBankAC1182890.0AC118289.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0099O15, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655428.10.0PREDICTED: protein SCARECROW-like
TrEMBLJ3M8960.0J3M896_ORYBR; Uncharacterized protein
STRINGOB05G28200.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138132528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.12e-36GRAS family protein