PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G28330.1
Common NameLOC102706285
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 413aa    MW: 46018.2 Da    PI: 6.7968
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G28330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.29.2e-344498155
       G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                  kprl+WtpeLH+rFv+av+qLGG+ekAtPkt+++lm+++gLtl+h+kSHLQkYRl
  OB05G28330.1 44 KPRLKWTPELHQRFVDAVNQLGGAEKATPKTVMRLMGIPGLTLYHLKSHLQKYRL 98
                  79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.38741101IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-324299IPR009057Homeodomain-like
SuperFamilySSF466898.6E-174399IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-234499IPR006447Myb domain, plants
PfamPF002497.8E-104697IPR001005SANT/Myb domain
PfamPF143792.8E-22146193IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MYHQHQGRSD LFTTRTSFPM ERHLFLHGGN TQGDSGLVLS TDAKPRLKWT PELHQRFVDA  60
VNQLGGAEKA TPKTVMRLMG IPGLTLYHLK SHLQKYRLSK NLQGQTNVGT TKNALGGCTD  120
VADRIPGTSA LAMASANAIP QAEKTIQIGE ALQMQIEVQR QLNEQLEVQR HLQLRIEAQG  180
KYLQAVLEQA QETLGKQNLG PASLEDAKVK ISELVSQVSN ECLSNAVTEI RESSGIHGLE  240
PRQIQFVESS ANNCLSAAEG FIKEHRLQSH GVLKAYDDST LFCQKRSQDQ DSQYSLNRSL  300
SERRTGQLYG GTEYHKAEGN ESDTEVLHEY IATQKNGGGS TTSSTSGSKE VNVEKLYLDE  360
PSCKRQAVEY RRESKLLDFE QQSSGKKLDL NTHNIDDNDQ GYRHFDLNGF SWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-2044100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-2044100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-2044100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-2044100157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G28330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2413620.0AK241362.1 Oryza sativa Japonica Group cDNA, clone: J065151H17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654563.10.0PREDICTED: uncharacterized protein LOC102706285
RefseqXP_006654564.10.0PREDICTED: uncharacterized protein LOC102706285
TrEMBLJ3M8A90.0J3M8A9_ORYBR; Uncharacterized protein
STRINGOB05G28330.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122793137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-100G2-like family protein