PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G28670.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 279aa    MW: 31226.4 Da    PI: 7.0095
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G28670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.61.2e-3265119155
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   k+rlrWt++LH+rFv+a++qLGG+++AtPk +l +m+v+g+t++hvkSHLQkYRl
  OB05G28670.1  65 KQRLRWTSDLHNRFVDAIAQLGGPDRATPKGVLTVMGVPGITIYHVKSHLQKYRL 119
                   79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.86762122IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-3064120IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-2565120IPR006447Myb domain, plants
SuperFamilySSF466891.51E-1665119IPR009057Homeodomain-like
PfamPF002493.0E-767118IPR001005SANT/Myb domain
PfamPF143792.6E-24151197IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDGLWHPLMF RWCSWLLRCI LMMYHANKFS VPFGPQSVQS DHMSDIGAFG GSNMRGAANP  60
AGNGKQRLRW TSDLHNRFVD AIAQLGGPDR ATPKGVLTVM GVPGITIYHV KSHLQKYRLA  120
KYIPESPAEG SKDEKKDSSD SLSNTDSAPG MQINEALKMQ MEVQKRLHEQ LEVQRQLQLR  180
IEAQGKYLQM IIEEQQKLGG SLKACDQNLS HSPPRLDDYP DSLQPSPKKP KMDSLSPDSV  240
RDVAQSDFES HLIGPWDQNI CDATLQVDEF KADPGLNKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-2364122159Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-2364122159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-2364122159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-2364122159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-2364122159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-2364122159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-2364122159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-2364122159Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G28670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8300690.0CT830069.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051M08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654580.10.0PREDICTED: protein PHR1-LIKE 1-like
SwissprotQ9SJW07e-73PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLJ3M8E30.0J3M8E3_ORYBR; Uncharacterized protein
STRINGOB05G28670.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79133343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.17e-54G2-like family protein