PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G29080.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 120aa    MW: 12664.3 Da    PI: 9.9106
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G29080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2285.5e-091941224
           AP2  2 gykGVrwdkkrgrWvAeIrd.pse 24
                  +y+GVr ++ +gr++AeIrd +++
  OB05G29080.1 19 HYRGVRKRP-WGRYAAEIRDpWKK 41
                  7********.**********8854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.53E-61951IPR016177DNA-binding domain
PROSITE profilePS510329.9819110IPR001471AP2/ERF domain
SMARTSM003800.008819100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-91943IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MEVEMGVGGG GGGGRAEAHY RGVRKRPWGR YAAEIRDPWK KTRPQGPGHF GGLDISHPSP  60
WHYVYFPAKM QAMAPAAAGH VAASSLPSTT LELRTGPSGA AALPFDLNEP PTPSLLFGST
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G29080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1085232e-32AC108523.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1118_C04, complete sequence.
GenBankAK2423932e-32AK242393.1 Oryza sativa Japonica Group cDNA, clone: J080064G22, full insert sequence.
GenBankAP0149612e-32AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126132e-32CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8288802e-32CT828880.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038E23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692649.14e-57PREDICTED: ethylene-responsive transcription factor 3-like
TrEMBLJ3M8I49e-81J3M8I4_ORYBR; Uncharacterized protein
STRINGOB05G29080.11e-81(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.18e-14ERF domain protein 12