PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G29110.1
Common NameLOC102711809
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 628aa    MW: 68637.7 Da    PI: 9.4876
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G29110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-07104125325
                   S---SGGGGTS--TTTTT-SS-S CS
       zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                   t++C f+a+ G+C+ G +C+F H
  OB05G29110.1 104 TKICIFYAQ-GQCNNGTSCTFLH 125
                   899******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.92101128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6102126IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-5104125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-6104126IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MAGTGRSAVL PATDEAVKAG RPGVGPTKRA RDPANAKDLN GFVGGFAAEK KPTVQANSNK  60
KYQKKGGNVL VSQSSPDSNG LSSQQRFGSS SPGGDLRNKA RKPTKICIFY AQGQCNNGTS  120
CTFLHKGEVS GSDNQGYEHH RGTGEGSQMQ HLSDFKELQL GKVGLFQNEI NITLIHAYGE  180
DNKGLSHPLV KHSPHTPKVS HGSKIDGSLT TKPTDEVVQF PVVQEKNHGP YFMGHQISLN  240
NNSCLDDRGA TSRLRLDGGN LQFDMAKGGS PRDSLLSRSY LEMNPLKPDY RYQPFDSTIC  300
FDPRQYSKKL SAYVGATENL PCKYQEEKSS RHASYNLNCF TGFRNPSYDS SDYSLASQSL  360
RATSHSGTLP LHRLAPDKDG SHHKDADIDK GVTSRSTLHV SSSPQSVVAS PGKLSPVKDE  420
VWITSVPFVP SFDLPDFLGS ASSSKSQYEP LVDRIDPPKV ESLNNLKSSN ISCSISNQHG  480
DTNAIRGRSL EKPLTCADKL ARNASAKGSN EFVGLISYDR GHNSSLDDDN RVKTCERKDV  540
VSLNDEKADF RFHLVEHVKE LVKPIWKEGN LSKDAHKLIV KKSVDKIFAS VEPSQRPGTK  600
KLIATYIEAS APKIEKLVKA YVDRHRTA
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G29110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1085230.0AC108523.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1118_C04, complete sequence.
GenBankAC1306050.0AC130605.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0010D04, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693173.10.0PREDICTED: zinc finger CCCH domain-containing protein 36-like
SwissprotQ75K810.0C3H36_ORYSJ; Zinc finger CCCH domain-containing protein 36
TrEMBLJ3M8I70.0J3M8I7_ORYBR; Uncharacterized protein
STRINGOB05G29110.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110102123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-14C3H family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]