PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G31090.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 139aa    MW: 15443.8 Da    PI: 10.8815
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G31090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.61.1e-3260118159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   ldDgy+WrKYGqK vk+s+fprsYYrCt+++C+vkk+v+r a+d  +v++tYeg Hnh+
  OB05G31090.1  60 LDDGYRWRKYGQKAVKNSDFPRSYYRCTHHTCSVKKQVQRLAKDRGIVVTTYEGVHNHP 118
                   59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-3345118IPR003657WRKY domain
SuperFamilySSF1182901.06E-2852119IPR003657WRKY domain
PROSITE profilePS5081128.10555120IPR003657WRKY domain
SMARTSM007742.2E-3660119IPR003657WRKY domain
PfamPF031063.3E-2661118IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
XXSSTVTTAG GSSGVTEATA TTNRQLQGSA RRGRGNGRKA GGGGRTPRFA FHTRSENDVL  60
DDGYRWRKYG QKAVKNSDFP RSYYRCTHHT CSVKKQVQRL AKDRGIVVTT YEGVHNHPCE  120
KLMEALNPIL RQLQLLSQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-25531171074Probable WRKY transcription factor 4
2lex_A4e-25531171074Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G31090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8404121e-102DQ840412.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 13 (WRKY13) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655508.19e-98PREDICTED: probable WRKY transcription factor 43
SwissprotQ9FFS33e-55WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLJ3M9351e-97J3M935_ORYBR; Uncharacterized protein
STRINGOB05G31090.12e-98(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.14e-55WRKY DNA-binding protein 24