PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G32650.1
Common NameLOC102711977
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 295aa    MW: 31386.2 Da    PI: 6.8619
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G32650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.5e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ ++++ G+g +W + +++ g++R++k+c++rw++yl
     OB05G32650.1 14 KGPWSPEEDAKLKAYIEENGTGgNWIALPQKAGLNRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding36.89.2e-1271111446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       T++Ed ++  +    G++ W+ Ia++++ gRt++++k++w++
     OB05G32650.1  71 YTEQEDHIICSLYSSIGSR-WSIIASKLP-GRTDNDVKNYWNT 111
                      69*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.875966IPR017930Myb domain
SuperFamilySSF466896.68E-2711109IPR009057Homeodomain-like
SMARTSM007175.9E-121364IPR001005SANT/Myb domain
PfamPF002495.9E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-231569IPR009057Homeodomain-like
CDDcd001677.28E-91662No hitNo description
SMARTSM007177.3E-1067115IPR001005SANT/Myb domain
PROSITE profilePS5129414.62667117IPR017930Myb domain
PfamPF002491.6E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2170116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGRAPCCDKA SVKKGPWSPE EDAKLKAYIE ENGTGGNWIA LPQKAGLNRC GKSCRLRWLN  60
YLRPDIKHGG YTEQEDHIIC SLYSSIGSRW SIIASKLPGR TDNDVKNYWN TKLKKKAMGA  120
VQPPRGAGAG ARAFSAAPAT PPDTVQSQCT SSAQAPALSP ASSSVTSSSG DACFATTMYP  180
QPTTSPQQYI RFDAPAAASQ TELPPVPPTA TVTPDGCNWA STEAGAVSLD DVFLGELTAG  240
EQLFPYADLF SSFTGLPESK ANLELSACYF PNMAEMWAAS DHAHAKPQGL CNTLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G32650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084521e-146AK108452.1 Oryza sativa Japonica Group cDNA clone:002-143-C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654754.10.0PREDICTED: transcription factor RAX1-like
TrEMBLJ3M9J10.0J3M9J1_ORYBR; Uncharacterized protein
STRINGOB05G32650.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.16e-74myb domain protein 84