PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G33420.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WOX
Protein Properties Length: 316aa    MW: 33661.8 Da    PI: 6.7552
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G33420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.12.7e-0766102237
                   T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC CS
      Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl 37 
                   ++R+++ +eq+++Le  F++   +p ++e++++  +l
  OB05G33420.1  66 KPRWNPRPEQIRILEGIFNSgMVNPPRDEIRRIRLQL 102
                   89*****************99************9888 PP
2Wus_type_Homeobox61.42e-2065109246
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkie 46 
                        +++RW+P+peQi+iLe +++sG+++P+++ei+ri+ +L+eyG+++
       OB05G33420.1  65 PKPRWNPRPEQIRILEGIFNSGMVNPPRDEIRRIRLQLQEYGQLT 109
                        689***************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000466.7E-566102IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MFRSNLACNI RQLQQQPDMN GNGSGGGGGS SSPSLFLSPS PPVATSGKPS LISSGCEEGT  60
RNPEPKPRWN PRPEQIRILE GIFNSGMVNP PRDEIRRIRL QLQEYGQLTS PESTSLLLQW  120
PPGQYMPATE LGGVLGSHGH NPAVTHHQPS ISPGVLLAGL CNEALGQEIM DDMSCSKQGF  180
GHYMDMSCTE LSSKTDAVST VIRDDEKARL GLLPYGVGVT ASATDPAPRH HHHHHHHHLA  240
SPVHAAVAAA DAPFTTTAAA TPSSNVVASN SALADQLQGN ETRLGYVKSP VHAPILSCYM  300
HMLAVDAKRD ISMTEG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G33420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1241432e-69AC124143.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0053D02, complete sequence.
GenBankAP0149612e-69AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126132e-69CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692702.10.0PREDICTED: WUSCHEL-related homeobox 12-like
SwissprotA3B6V05e-52WOX12_ORYSJ; WUSCHEL-related homeobox 12
TrEMBLJ3M9R80.0J3M9R8_ORYBR; Uncharacterized protein
STRINGOB05G33420.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.11e-26homeobox-3
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]