PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G33490.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 235aa    MW: 24549.3 Da    PI: 5.4091
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G33490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY38.13e-12195220228
                   --SS-EEEEEEE--TT-SS-EEEEEE- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCt 28 
                   +Dgy+WrKYGqK vk+s+fpr Y  C+
  OB05G33490.1 195 EDGYRWRKYGQKAVKNSPFPR-YASCS 220
                   8*******************9.66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-12183220IPR003657WRKY domain
SuperFamilySSF1182905.49E-10186216IPR003657WRKY domain
PROSITE profilePS5081113.161189215IPR003657WRKY domain
SMARTSM007741.3E-4194226IPR003657WRKY domain
PfamPF031061.2E-7195216IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSGASHDHLQ LGGGDGFPFR DELASLFAQR PGDGGMTGLL QQHTWPTSFI DYEAFVGELD  60
DDVPPAAGPL LDEVKRELVV DCTTAGVGLS GGGGGGAAAT VGPMTPNSMS VSSTSSEACG  120
AGGAGGDEES AGKCKEEGDG DDGKEGSATT KGDAEGEDKN KKGAAGKGKG KGEKRPRQPR  180
LAFAFMTKSE VDHLEDGYRW RKYGQKAVKN SPFPRYASCS LIFLLRRLNV YKLKI
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G33490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637917.13e-50WRKY transcription factor 23
TrEMBLJ3M9S51e-170J3M9S5_ORYBR; Uncharacterized protein
STRINGOB05G33490.11e-170(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.27e-18WRKY DNA-binding protein 57