PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G33580.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 410aa    MW: 44546.1 Da    PI: 8.8951
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G33580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30335393259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +v+++tYeg+Hnh+
  OB05G33580.1 335 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTVLITTYEGHHNHP 393
                   7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-33319395IPR003657WRKY domain
SuperFamilySSF1182905.62E-28327395IPR003657WRKY domain
PROSITE profilePS5081129.907329395IPR003657WRKY domain
SMARTSM007741.4E-36334394IPR003657WRKY domain
PfamPF031061.0E-26336393IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MESVYLGVKR KNVVVGGGGG ARGGRPPLVP PSAVAAAGLG YGGMTKEGAY QERRAVVAGE  60
MDFFKTAEKR GERKEPPPLA PAAGHAGASP DDLNLNQDDL TINMGLHIGR RRNSGSEEST  120
VDDGAYSDED YREAKATLAI TKSELGRVSD ENKQLKNMLN NMNTKYNSLK MQFALMQQRI  180
NQKSSLVPPI HHEQLVDPEK EQEGSQQQQQ QIPRQFISLG SAVLQGDVEA PHSVGAGNPD  240
AAVPPAMMPL PHFDHHHHHP IHGRERGGSP VEADHHHRHH QQEQQPQQLP PQSWLPADRA  300
PKFLPGKGPE PVAEAATMRK ARVSVRARSE APMISDGCQW RKYGQKMAKG NPCPRAYYRC  360
TMAAGCPVRK QVQRCAEDRT VLITTYEGHH NHPLPPAAMA MGATTGGGGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-22325395877Probable WRKY transcription factor 4
2lex_A9e-22325395877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G33580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209864e-55AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAP0149614e-55AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655596.10.0PREDICTED: probable WRKY transcription factor 42
TrEMBLJ3M9T40.0J3M9T4_ORYBR; Uncharacterized protein
STRINGOB05G33580.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126952734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.14e-68WRKY family protein