PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G33630.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 89aa    MW: 10055.9 Da    PI: 5.0804
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G33630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285.1e-091864346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +W++ E + + +a + +G g   +W+++++ mg  +++++++ ++ +
     OB05G33630.1 18 NWSQKENKMFEEALAYYGEGtpnRWDKVSSAMGGSKSAEEVRCHYED 64
                     8********************************99*********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.411166IPR017877Myb-like domain
SMARTSM007171.6E-61568IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-41666IPR009057Homeodomain-like
SuperFamilySSF466898.22E-131774IPR009057Homeodomain-like
PfamPF002491.2E-71865IPR001005SANT/Myb domain
CDDcd001670.008372166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MSGSRSSSPN SNSNSNSNWS QKENKMFEEA LAYYGEGTPN RWDKVSSAMG GSKSAEEVRC  60
HYEDLVDDVN MIESGRVQYP KYKTQGFWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-201186377RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G33630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209867e-72AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAK1211337e-72AK121133.1 Oryza sativa Japonica Group cDNA clone:J023075P20, full insert sequence.
GenBankAP0149617e-72AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126137e-72CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808384.13e-42protein RADIALIS-like 3
SwissprotQ6NNN05e-23RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLJ3M9T92e-59J3M9T9_ORYBR; Uncharacterized protein
STRINGOB05G33630.13e-60(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.19e-22RAD-like 1