PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G33720.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 235aa    MW: 25684.4 Da    PI: 6.4018
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G33720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49.1e-152269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd+ l+++++  G g W++ ar  g+ Rt+k+c++rw++yl
     OB05G33720.1 22 KGPWTMEEDLSLANYIAANGDGAWNALARAAGLSRTGKSCRLRWLNYL 69
                     79********************************************97 PP
2Myb_DNA-binding55.81.1e-1775118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE+ l+v++ +++G++ W++Iar+++ gRt++++k++w++
     OB05G33720.1  75 RGNITPEEHTLIVELQARWGNR-WSKIARHLP-GRTDNEIKNFWRT 118
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.671769IPR017930Myb domain
SuperFamilySSF466891.37E-2820116IPR009057Homeodomain-like
SMARTSM007173.7E-102171IPR001005SANT/Myb domain
PfamPF002491.3E-132269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-212376IPR009057Homeodomain-like
CDDcd001672.35E-72469No hitNo description
PROSITE profilePS5129424.70770124IPR017930Myb domain
SMARTSM007171.0E-1474122IPR001005SANT/Myb domain
PfamPF002494.8E-1575118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2277123IPR009057Homeodomain-like
CDDcd001673.78E-1279118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEYTVDGSGD GGEQQEAAAV RKGPWTMEED LSLANYIAAN GDGAWNALAR AAGLSRTGKS  60
CRLRWLNYLR PDVRRGNITP EEHTLIVELQ ARWGNRWSKI ARHLPGRTDN EIKNFWRTKI  120
QKKHRRRTYG IHATTSESIR PAAAGYLTAV AEDQGSSSIS GRTTVVVTQE YGIAAPQLGS  180
LSLDHPASYP SAIHGGEGAD AGGDIVVSEE FLAASNDNFW VLEDLWPTVQ SLHGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-23221237107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G33720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209864e-54AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAC1209904e-54AC120990.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0040E06, complete sequence.
GenBankAP0149614e-54AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126134e-54CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655601.21e-173PREDICTED: myb-related protein 340-like
TrEMBLJ3M9U81e-172J3M9U8_ORYBR; Uncharacterized protein
STRINGOB05G33720.11e-173(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.19e-69myb domain protein 21