PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB05G34110.1

Common Name

LOC102707874

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YB

Protein Properties

Length: 141aa MW: 15474.4 Da PI: 4.7461

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB05G34110.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	173.1	3e-54	19	114	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 reqdrflPian++rim++++P+n+ki+kd+ke+vqecvsefisf+tseasdkc +ekrktingddl+w+++tlGfedyveplk+ylk yre+eg++ OB05G34110.1 19 REQDRFLPIANIGRIMRRAVPENGKIAKDTKESVQECVSEFISFITSEASDKCLKEKRKTINGDDLIWSMGTLGFEDYVEPLKLYLKLYRETEGDS 114 89********************************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.9E-48	17	118	IPR009072	Histone-fold
SuperFamily	SSF47113	1.55E-36	21	115	IPR009072	Histone-fold
Pfam	PF00808	1.8E-25	24	88	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.4E-19	52	70	No hit	No description
PROSITE pattern	PS00685	0	55	71	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.4E-19	71	89	No hit	No description
PRINTS	PR00615	3.4E-19	90	108	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MSEGLDGTEN GGGSGGGGRE QDRFLPIANI GRIMRRAVPE NGKIAKDTKE SVQECVSEFI 60 SFITSEASDK CLKEKRKTIN GDDLIWSMGT LGFEDYVEPL KLYLKLYRET EGDSKIPRAS 120 EHPVKKDILL NGDPGSSFDG M

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	3e-46	19	109	3	93	NF-YB
4awl_B	3e-46	19	109	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	3e-46	19	109	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269\|PubMed:14617083}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB05G34110.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB095440	1e-172	AB095440.1 Oryza sativa Japonica Group OsHAP3C mRNA for HAP3, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006654820.1	2e-99	PREDICTED: nuclear transcription factor Y subunit B-4 isoform X1
Swissprot	Q65XK1	1e-83	NFYB4_ORYSJ; Nuclear transcription factor Y subunit B-4
TrEMBL	J3M9Y7	4e-98	J3M9Y7_ORYBR; Uncharacterized protein
STRING	OB05G34110.1	7e-99	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	1e-56	nuclear factor Y, subunit B8

Link Out ? help Back to Top
Entrez Gene	102707874

Publications ? help Back to Top
Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]