PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G34300.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 336aa    MW: 36633.5 Da    PI: 7.5396
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G34300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.51.4e-15262287126
                   --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                   +ktelC+ + +tG C+yGd+C+FaHg
  OB05G34300.1 262 FKTELCNKWEETGACPYGDQCQFAHG 287
                   79***********************9 PP
2zf-CCCH22.61.9e-07300325126
                   --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                   ykte Cr  + +G C+yG rC+F H+
  OB05G34300.1 300 YKTEVCRMVLSGGVCPYGHRCHFRHS 325
                   9**********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.1E-19256294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-10258293IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-10261288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601261289IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-12262287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-13295325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-9295327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.713299327IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-5299326IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-5300325IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MQEALLPPAH PDRFYSALGP MAFGGVDQRF SSPNPLTSGE DLFYGCYSPF SPSPPPRAAS  60
LSHCSSSSDS VIDDVDDAAA TEHRLHLTRL ALQYQEVANR FELCLSHLAD AADEAAALRR  120
ENAELRVANN NLACRIAKFG GMQGSAITLA GDLRRLRLAE EQTVPVLPPP PPPPSPPAAA  180
LMHPVAVPEK QAVLPKSISI RSTGYQKLNQ GGKHRVSKPL NVSSQRVFVG IDGAEGGEHK  240
GGVKEDPPMG GLEFEVYNQG MFKTELCNKW EETGACPYGD QCQFAHGVAE LRPVIRHPRY  300
KTEVCRMVLS GGVCPYGHRC HFRHSITPAD RFSFRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-23262325467Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G34300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063540.0AK106354.1 Oryza sativa Japonica Group cDNA clone:002-102-A03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692919.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X2
SwissprotQ6L5G10.0C3H39_ORYSJ; Zinc finger CCCH domain-containing protein 39
TrEMBLJ3MA060.0J3MA06_ORYBR; Uncharacterized protein
STRINGOB05G34300.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-50C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]