PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G34350.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 189aa    MW: 22054.9 Da    PI: 10.4113
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G34350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.13e-1351102657
                   S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
      Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                   ++t eq ++L e++++n++++ ++++eLA++l+L  +qV  W  NrR + k+
  OB05G34350.1  51 RLTMEQCKQLDEFYRQNPTIDVKQKRELAARLNLRLKQVDSWIRNRRSRSKQ 102
                   6899*********************************************996 PP
2HD-ZIP_I/II66.17.9e-2248135289
   HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                   ++ rl+ eq k+L+e ++++ +++ ++K ela +L+l+ +qv+ W  nrR R k+k +E+++++Lk++++  +e+n++L+ +ve+L++
  OB05G34350.1  48 RHARLTMEQCKQLDEFYRQNPTIDVKQKRELAARLNLRLKQVDSWIRNRRSRSKQKSTEMECKQLKESLNIAQEDNHSLRLQVEQLKT 135
                   678***************999*****************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.4E-1239104IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-1243104IPR009057Homeodomain-like
PROSITE profilePS5007113.76643103IPR001356Homeobox domain
SMARTSM003891.1E-744107IPR001356Homeobox domain
PfamPF000467.4E-1151102IPR001356Homeobox domain
CDDcd000861.32E-851104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MNKNAREQGV HLDLNRPYSG EEEELRLGVG MGVHRGEERG VLRRESSRHA RLTMEQCKQL  60
DEFYRQNPTI DVKQKRELAA RLNLRLKQVD SWIRNRRSRS KQKSTEMECK QLKESLNIAQ  120
EDNHSLRLQV EQLKTKNLQL QLQLHTHHWQ HAVRAPAGQQ ASTSAATGIF TSPWLDPNPY  180
RAWYSPNAL
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G34350.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655622.11e-137PREDICTED: homeobox-leucine zipper protein HOX3-like
TrEMBLJ3MA111e-138J3MA11_ORYBR; Uncharacterized protein
STRINGOB05G34350.11e-138(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1906588
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.16e-19homeobox-leucine zipper protein 17