PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G34580.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 110aa    MW: 12349.7 Da    PI: 9.6048
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G34580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding249.3e-082573247
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     g WT+   +++ +a + +  +   +W+ +ar+mg  +++ +++ ++ ++
     OB05G34580.1 25 GGWTQRQNKQFECALAVYDREtpdRWHNVARYMGGAKSADEVRRHFEQL 73
                     56*****************88*************999********9775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.2141974IPR017877Myb-like domain
SMARTSM007171.8E-62376IPR001005SANT/Myb domain
PfamPF002491.4E-52573IPR001005SANT/Myb domain
SuperFamilySSF466891.37E-102582IPR009057Homeodomain-like
CDDcd001671.00E-62774No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MASAAAGSSK QQQQVTTMLP SSRGGGWTQR QNKQFECALA VYDRETPDRW HNVARYMGGA  60
KSADEVRRHF EQLVEDVARI ESGRVPFPRY AAASTTEGNI DQRRSLQLSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-2619108190RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G34580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126131e-92CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8364521e-92CT836452.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN015B15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639028.16e-48protein RADIALIS-like 3
SwissprotQ1A1733e-26RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLJ3MA342e-76J3MA34_ORYBR; Uncharacterized protein
STRINGOB05G34580.13e-77(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.14e-28RAD-like 6