PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G35760.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 1104aa    MW: 123272 Da    PI: 4.6444
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G35760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.82.9e-11641664427
                   ---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                   ++C++++r+GtC+yG +C+F+H++
  OB05G35760.1 641 RNCSYYMRNGTCSYGKKCHFNHPE 664
                   79********************96 PP
2zf-CCCH22.42.2e-07814839227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                   ++++C+f+ r+G Ck+ + Ck+ H++
  OB05G35760.1 814 RRPECPFYTRFGDCKFASACKYDHSK 839
                   589*********************95 PP
3zf-CCCH28.62.5e-09878904127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                   +++++C+f++r+G Ck+ + Ck++H++
  OB05G35760.1 878 PGRPECPFYMRFGDCKFASACKYHHSK 904
                   689**********************95 PP
4zf-CCCH36.21e-11918943126
                   --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                   +++++C+f++++G+Ck+G  CkF+H 
  OB05G35760.1 918 PGEPECPFYMKNGYCKFGVECKFHHL 943
                   5799*********************6 PP
5zf-CCCH21.15.7e-079871013127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                    ++++ Cr+++++G Cky + C F+H++
  OB05G35760.1  987 PGQPDCRYYMQFGKCKYWSACIFHHPK 1013
                    5789*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.385637665IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-5637664IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8641664IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6641665IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-5643664IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.685812840IPR000571Zinc finger, CCCH-type
SMARTSM003560.026813839IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.277877905IPR000571Zinc finger, CCCH-type
SMARTSM003560.0038877904IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-6878904IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.704917945IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5917944IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-9919943IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-5921943IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.2679861014IPR000571Zinc finger, CCCH-type
SMARTSM003560.00879861013IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-59901016IPR000571Zinc finger, CCCH-type
SMARTSM003560.1810421069IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.23910421070IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-510461072IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1104 aa     Download sequence    Send to blast
MDDDDAVAAG KPLLSQDSSM PMEEEEEEED QLLAASTSGS GGPLAIGRRL LSSMSLTRTL  60
SAITLAQPPL PQNPPPPLGL SLLLHPDDAV TGFRDLAHAL DTLPFQCAQP HLIQPLQLAT  120
VPTTAAAQPP QMLHPQAWEK TVIRQGSAAP FKHQVQTVEQ RHELEEAMDG NLPQDHGMVD  180
QQGTTDNQGA IKDGNTLEFQ ELVLVQQDVI QERGQTTQDI AVEDQNKAVE NSVSGEFRGT  240
MDNYAMGYLE VVEHDLIDQS GETVDGIAVD DQVKEVEHGV IRERSETTDC VAIKDQEQVM  300
EQFASYGPRV TKDNIIMDHQ VLVVQSVIDE RVEDQRRALQ QCIIGKLRTT ENNNVVEDST  360
MVEQSITDEF AEAMGDIAVE DQEMTLVQCT NDELEGTENY NALEDRVSEQ GAIYERGAYS  420
STEDQENAVE QCAGDVANAT KVNNVVPVEE KAVEQDGIGK EDIAMKDQEE AMEQCGNDEL  480
RTSKNEKVVE GHKVEEQGVI DENLAELSIN DEPRITKDVI AFQDQGKMFE QRVGNEQVAS  540
KGKFAIQDNM EVVDHVCHEW DTTEDDLAID VAASVGTNAI SFSEDLITLN DNVSGWGMVK  600
ENVKLKAKPD ISSFPSEQEN YGATGILELN RVGLPIIEGA RNCSYYMRNG TCSYGKKCHF  660
NHPEQVIDSQ FDPPTGWDDD AFPSSALSKK SHDHANPGDT SYLENYDHAT FVGISYIISS  720
DYTTSDDTSY FKRSSSHVAS DKKSSVSMVL PPNILRMLLP PEKVPPSTEE KVMKVNKDIN  780
WTAASDDSSG CSADSTGRAL GKQEHVNYLE RPGRRPECPF YTRFGDCKFA SACKYDHSKD  840
RFTNRSSAAS DKSNGCHSAD SLGGALCKQK HVDYPERPGR PECPFYMRFG DCKFASACKY  900
HHSKDRQGEE LVEHPERPGE PECPFYMKNG YCKFGVECKF HHLKGSIPSR WSPKDIKGPV  960
APKEHHPASK IKLQDHMYQQ DQYPERPGQP DCRYYMQFGK CKYWSACIFH HPKDRLSNGC  1020
HPSEETVPKQ EEHTEHALYP ERPGELECFY YMRHGSCKFQ RNCKYHHPKD RLSNKSHHFV  1080
SLDAIEQTTD KRVAELVKRI AASC
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G35760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692874.10.0PREDICTED: uncharacterized protein LOC107304222 isoform X1
TrEMBLJ3MAF20.0J3MAF2_ORYBR; Uncharacterized protein
STRINGOB05G35760.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147291820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.37e-48zinc finger nuclease 3