PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G10550.1
Common NameLOC102714929
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 199aa    MW: 21694.6 Da    PI: 9.9916
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G10550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B384.11.3e-2636140199
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                   f+kv tpsdv+k++rlv+pk++ae++         +++ ++ l +ed +    ++W+++++y+ +s++yv+tkGW++Fv++++L +gD+v F    r
  OB06G10550.1  36 FEKVVTPSDVGKLNRLVVPKHYAEKYfplgaaaR-SSPAGTVLCFEDARRgggETWRFRYSYWSSSQSYVITKGWSRFVRDKRLVAGDTVSFC---R 128
                   99***************************99953.4456789*****544488***************************************9...5 PP

                   SEE..EEEEE-S CS
            B3  88 sefelvvkvfrk 99 
                    +++l++  +r+
  OB06G10550.1 129 AGGRLFIDCRRR 140
                   667888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-3529141IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.55E-2832134IPR015300DNA-binding pseudobarrel domain
CDDcd100173.13E-2134126No hitNo description
SMARTSM010198.8E-1936141IPR003340B3 DNA binding domain
PfamPF023628.8E-2436140IPR003340B3 DNA binding domain
PROSITE profilePS5086313.47936141IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MAMTTTMVAW ESRRDQLQGG GGGGHGHGGE RREHMFEKVV TPSDVGKLNR LVVPKHYAEK  60
YFPLGAAARS SPAGTVLCFE DARRGGGETW RFRYSYWSSS QSYVITKGWS RFVRDKRLVA  120
GDTVSFCRAG GRLFIDCRRR AAVPPTTSSL APQAASINVQ RSSAVDEKEA AAGCGGRCLR  180
LFGVDLQLLA EPPALDLQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-45321434116B3 domain-containing transcription factor NGA1
5os9_B1e-45321434116B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G10550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0006161e-146AP000616.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0514G12.
GenBankAP0011291e-146AP001129.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0644B06.
GenBankAP0149621e-146AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankKC0191721e-146KC019172.1 Oryza sativa Indica Group cultivar TN1 insect-resistance protein (BPH29) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656550.21e-145PREDICTED: B3 domain-containing protein Os06g0107800-like
SwissprotQ5VS552e-80Y6078_ORYSJ; B3 domain-containing protein Os06g0107800
TrEMBLJ3MAL11e-144J3MAL1_ORYBR; Uncharacterized protein
STRINGOB06G10550.11e-145(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129472934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.15e-47B3 family protein