PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G10740.1
Common NameLOC102702197
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 389aa    MW: 41610.1 Da    PI: 5.9685
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G10740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.6e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+llvd++++ G g+W++ ++  g++R++k+c++rw +yl
     OB06G10740.1 15 KGPWTPEEDKLLVDYIRRNGHGSWRRLPKNAGLNRCGKSCRLRWTNYL 62
                     79********************************************97 PP
2Myb_DNA-binding513.2e-1668113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T +E+ l++++++ lG++ W++Ia ++  gRt++++k++w+++l
     OB06G10740.1  68 RGDFTDDEERLIINLHATLGNK-WSSIATKLK-GRTDNEIKNYWNTHL 113
                      899*******************.********9.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-24765IPR009057Homeodomain-like
PROSITE profilePS5129418.7121062IPR017930Myb domain
SuperFamilySSF466892.13E-2912109IPR009057Homeodomain-like
SMARTSM007171.2E-141464IPR001005SANT/Myb domain
PfamPF002491.0E-161562IPR001005SANT/Myb domain
CDDcd001671.43E-111762No hitNo description
PROSITE profilePS5129426.87563117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2566117IPR009057Homeodomain-like
SMARTSM007171.8E-1567115IPR001005SANT/Myb domain
PfamPF002497.0E-1568113IPR001005SANT/Myb domain
CDDcd001679.57E-1271113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MGRSPCCEQD ADVKKGPWTP EEDKLLVDYI RRNGHGSWRR LPKNAGLNRC GKSCRLRWTN  60
YLRPDIKRGD FTDDEERLII NLHATLGNKW SSIATKLKGR TDNEIKNYWN THLRKKLLNQ  120
GIDPVTHRPR TDLLAGLPNL LAAANLGGAA AAQLPLDINA IKLQADAAKF QILQGLVRVL  180
ASATAAPAPA AAPSAMDLMT ILGAITGANS GGLLGQQQQQ LSSVDLSRLG QYDGNYSLPP  240
LTNSCSPQQQ QPMRPPPMSS SMSLDGMLDR LVSGTGVPSG DVMSSPELCH GGDGLSSPAL  300
GHTPVATPSM VASEDQCNTP GGGGGMTSCE QTPVASSTFD GLASLNLDDV DIVNMEVCWT  360
DVLLEPLPAW LSNSNPSDMY FPKNNTGEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29121174108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G10740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126141e-139CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655703.10.0PREDICTED: uncharacterized protein LOC102702197
TrEMBLJ3MAN00.0J3MAN0_ORYBR; Uncharacterized protein
STRINGOB06G10740.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.24e-74myb domain protein 9