PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G10790.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 781aa    MW: 88975.5 Da    PI: 10.5473
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G10790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.79.9e-32608661255
       G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  OB06G10790.1 608 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 661
                   8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.84E-15605662IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-28606661IPR009057Homeodomain-like
TIGRFAMsTIGR015574.6E-23608662IPR006447Myb domain, plants
PfamPF002496.5E-7609660IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    Send to blast
MELFPRQLDL SLNISTPSSS SSPSPAPAAT SWPWTSAKQL PADKEAAAMT ASARSAPLLP  60
RNSDVCSTRG AAAGAXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  360
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  420
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  480
XXXXXXXXXX XXXXXXXTTP THHGGGLANL QKQQQQLKAA AMQQLKEAAM QQPQPIHGVP  540
VYHHQQQQQR RQLHQPHAVV GDRRSDGGGG RRLFSHVGVA TPRTLPSPSP SRSMLARLPP  600
GRRGVRAPRM RWTTTLHARF VHAVELLGGH ERATPKSVLE LMDVKDLTLA HVKSHLQMYR  660
TIKNTDRPVS YAGQANDGFD NAPGGDISDD SFTDGLLRQN RSMLASGEQN DTNIYSGLWS  720
NNTSGKVDGL DLGLPVSEPA NEFYRIYLKN AHRSVGLETS VLSLPGRPNL EFTLGIGKAS  780
Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-15609663357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-15609663357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-15609663357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-15609663357Protein PHOSPHATE STARVATION RESPONSE 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G10790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP174351111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.11e-43G2-like family protein