PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G12770.1
Common NameLOC102717624
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 602aa    MW: 63097.9 Da    PI: 7.6723
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G12770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32e-30243302159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh+
  OB06G12770.1 243 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQVQRCADDMSILITTYEGTHNHP 302
                   58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.4E-32228302IPR003657WRKY domain
SuperFamilySSF1182903.01E-27236303IPR003657WRKY domain
PROSITE profilePS5081128.311238304IPR003657WRKY domain
SMARTSM007743.4E-37243303IPR003657WRKY domain
PfamPF031062.8E-27244302IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MKEEMIKGEK QLGTHEERLK DEVRKDGNQI SDGNFFKSLR NISSTKEEGQ DDKLASTREE  60
MGEVREENER LKTLLSRISQ DYRSLQMHFY DALQQGKAKK LPDHPPTTLN ADTEEHEFVS  120
LSLGMSTSKH KNEDRSTIGE VKRSTEDFLK IKEGGLSLGL SDRRAGANNT TDRVHQDVMT  180
LSPEGSFEDA KDDTAETTEQ WPPSKMLKNL RSVGAEAEDD IAPQPQVKKA RVSVRARCDA  240
PTMNDGCQWR KYGQKIAKGN PCPRAYYRCT VAAGCPVRKQ VQRCADDMSI LITTYEGTHN  300
HPLSVSATAM ASTTSAAASM LISGSSSSTS LGPYAAAPSP ALGFAATVDA ARPGGGGVGA  360
RPFFLPHAAA SITSTPSYPT ITLDLTSPAT SQGAFSLSNR FSSSFASSHA ARYPSTGFTF  420
SGGSGPSSTP WPGYLSYGAS LAAHPYNGGG KGSPFEAALR SINGRHGGGG AGGAQAGSPL  480
YQMQQKAVSG AAAAAPGVLT DTIAKAITAD PSFHTALAAA ITSYVGTKGA GAPASGGDDD  540
SKVGLKWGEH LGLGLAQSSP SSTTAAAAQS SSSQMFLQPS LGLSGSTTSA STSPVTNREQ  600
AH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-202433031776Probable WRKY transcription factor 4
2lex_A7e-202433031776Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G12770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037671e-153AP003767.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0036F10.
GenBankAP0149621e-153AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126141e-153CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693830.10.0PREDICTED: probable WRKY transcription factor 72
TrEMBLJ3MB830.0J3MB83_ORYBR; Uncharacterized protein
STRINGOB06G12770.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50473862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.17e-60WRKY DNA-binding protein 72