PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G13740.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 206aa    MW: 21988.1 Da    PI: 3.8143
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G13740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.48.2e-091263156
           AP2 31 fslgkfgtaeeAakaaiaarkklege 56
                  ++lg+f+taeeAa+ +++a+ +l+g+
  OB06G13740.1  1 VWLGTFDTAEEAARVYDHAAIRLHGP 26
                  7***********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.8E-14133IPR001471AP2/ERF domain
SMARTSM003801.6E-5139IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-10134IPR016177DNA-binding domain
PROSITE profilePS5103213.419133IPR001471AP2/ERF domain
CDDcd000187.52E-17134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
VWLGTFDTAE EAARVYDHAA IRLHGPSATT NFPVPRAALP SPPPPPPLLA ANAAAASGYD  60
ESSDESQLVT SPVSVLRSMP AQKPATATPK KEAREEDDCA GHTHKNPSPD DMFSQFTGDA  120
LNISPPDDDM FDGISFGDPT PPAPWFDDDC MTPLGHVSTD DEYPMMSTSL LDDDLGDLPP  180
WPEVESLFSN DIIGDEPVAA EPHPPL
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G13740.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642210.27e-71ethylene-responsive transcription factor 11
TrEMBLJ3MBI01e-145J3MBI0_ORYBR; Uncharacterized protein
STRINGOB06G13740.11e-145(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131332332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.26e-12ERF family protein