PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G13990.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 191aa    MW: 20760.5 Da    PI: 6.4302
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G13990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.41.1e-073312255
                  HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   L++l+P++      K +Ka++L +A+eY+k+Lq
  OB06G13990.1  3 ALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 31
                  799999997.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.131130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-8135No hitNo description
Gene3DG3DSA:4.10.280.106.1E-11141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-10241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-5331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MKALQSLIPN SNKTDKASML DEAIEYLKQL QLQVQMLSMR NGVYLNPSYL SGALEPAQAS  60
QMFAALGGNN VTVAHPGTVM PPLNQSSGGH HLFDPLNAPP QNQLPSLILP SVPSTAVPEP  120
PFHLESSQSH LRPFQLPGSS EMAFHGEIMP KHHLASHQES LPGNEMSSIR KESSMLNTDH  180
FDGGSHNKEQ L
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G13990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126141e-115CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881998.11e-121LOW QUALITY PROTEIN: transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like
TrEMBLJ3MBK51e-134J3MBK5_ORYBR; Uncharacterized protein
STRINGOB06G13990.11e-135(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-24bHLH family protein