PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G14480.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 227aa    MW: 25749.2 Da    PI: 5.0611
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G14480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-15174220147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r  WT+eE+ l++++ + +G g+Wk+I++++ ++Rt+ q+ s+ qky
     OB06G14480.1 174 RVVWTEEEHRLFLQGLRVFGRGDWKSISKHLVTTRTAVQVSSHAQKY 220
                      678*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.869169225IPR017930Myb domain
SuperFamilySSF466892.08E-18171225IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-11171221IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-17172223IPR006447Myb domain, plants
SMARTSM007173.3E-12173223IPR001005SANT/Myb domain
PfamPF002495.4E-13174220IPR001005SANT/Myb domain
CDDcd001671.23E-9177221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MDSIVIEGWT ASEIEEARSL ITSPNSGGSN SSGGNGDKKH GSIVSELHEW FPWKTMTEVI  60
DFYLKLTVET PAIIHSLNNS VVDNSMSNID LALANENLRR LEKEETMLNN EGLLFDYPLE  120
EMEMGNQIDQ NIEMVVEKEV EVQAEAASVI KEKVVEVSKI LTSRQRVVPS MKRRVVWTEE  180
EHRLFLQGLR VFGRGDWKSI SKHLVTTRTA VQVSSHAQKY FLKMEAK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G14480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642214.13e-95uncharacterized protein LOC107281238
TrEMBLJ3MBQ41e-164J3MBQ4_ORYBR; Uncharacterized protein
STRINGOB06G14480.11e-165(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165491112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10580.25e-20MYB_related family protein