PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G15600.1
Common NameLOC102705443
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 230aa    MW: 26607.1 Da    PI: 9.9258
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G15600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.29.5e-16132222199
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   f+k +++s+v+   +l lp +f +++  k  ++  ++l de   +++  +    ++++  l++GW++F  a++L +gD +vF+l++r++f  +v ++
  OB06G15600.1 132 FVKPMLQSHVTGGFWLGLPTHFSRKYLPK--RDERIVLVDEADDEFDTLY--LANKRG--LSGGWRGFSIAHKLVDGDCLVFQLIQRTKF--KVYII 220
                   89************************433..4557***************..555555..9************************99999..99998 PP

                   -S CS
            B3  98 rk 99 
                   r+
  OB06G15600.1 221 RA 222
                   86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-20125223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-23125223IPR015300DNA-binding pseudobarrel domain
CDDcd100174.25E-26130221No hitNo description
PROSITE profilePS5086311.73132223IPR003340B3 DNA binding domain
SMARTSM010191.8E-19132223IPR003340B3 DNA binding domain
PfamPF023623.1E-14132222IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAEATPYEEQ RRRQVEENKR KLEELRLHHL SAAVREAAAK PSPTKQRKRK ARATPGAGED  60
VPLRRSGRVA SLPERPKYQD EFQDFGKKIR RSYGGKRRYL SNRVYATDEE REHAITAAQE  120
LEEELGSDHP IFVKPMLQSH VTGGFWLGLP THFSRKYLPK RDERIVLVDE ADDEFDTLYL  180
ANKRGLSGGW RGFSIAHKLV DGDCLVFQLI QRTKFKVYII RASSYYETDS
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G15600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029800.0AK102980.1 Oryza sativa Japonica Group cDNA clone:J033115O10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656731.11e-170PREDICTED: B3 domain-containing protein Os06g0194400
SwissprotQ69V361e-152Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLJ3MC161e-168J3MC16_ORYBR; Uncharacterized protein
STRINGOB06G15600.11e-169(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.15e-54B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]